Fvir005883.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ferrisia virgata
Gene Symbol
-
Assembly
GCA_900060175.1
Location
FIZR01026503.1:3639-9398[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0018 0.16 12.6 1.7 1 23 48 70 48 70 0.98
2 24 5.4e-06 0.00049 20.6 3.1 1 23 76 98 76 98 0.98
3 24 3.7e-05 0.0033 17.9 0.4 1 23 104 126 104 126 0.98
4 24 8.3e-06 0.00075 20.0 3.5 1 23 132 154 132 154 0.98
5 24 7.3e-06 0.00066 20.1 1.6 1 23 160 182 160 182 0.98
6 24 5e-05 0.0045 17.5 0.6 1 23 188 210 188 210 0.99
7 24 0.00088 0.079 13.6 0.7 1 20 317 336 317 339 0.94
8 24 0.00072 0.066 13.9 3.2 1 23 345 367 345 367 0.99
9 24 3.5e-05 0.0032 18.0 3.0 1 23 373 395 373 395 0.97
10 24 0.6 55 4.7 5.8 1 23 401 423 401 423 0.95
11 24 5.3e-07 4.8e-05 23.7 2.6 1 23 429 451 429 451 0.98
12 24 4e-06 0.00036 21.0 0.3 1 23 457 480 457 480 0.97
13 24 0.0017 0.15 12.7 2.5 1 23 672 694 672 694 0.99
14 24 0.0015 0.14 12.8 6.6 3 23 702 723 700 723 0.95
15 24 0.00013 0.012 16.2 1.8 1 23 729 751 729 751 0.95
16 24 0.00011 0.0096 16.5 4.2 1 23 757 779 757 779 0.98
17 24 0.14 13 6.7 4.3 1 23 785 807 785 807 0.93
18 24 0.0002 0.018 15.6 1.6 1 23 812 834 812 834 0.98
19 24 9.9e-05 0.0089 16.6 0.5 1 23 849 871 849 871 0.97
20 24 7.3e-05 0.0066 17.0 3.6 1 23 877 899 877 899 0.96
21 24 8.3e-05 0.0075 16.8 0.3 1 23 905 927 905 927 0.98
22 24 0.33 30 5.5 6.2 2 23 934 955 933 955 0.97
23 24 0.00024 0.022 15.4 2.4 1 23 961 984 961 984 0.95
24 24 8.6e-06 0.00078 19.9 0.5 2 23 990 1011 989 1011 0.97

Sequence Information

Coding Sequence
ATGGATAATTCGTTTTCAAACAACGATTGCTTTCCTGctttaccaatttttccaaaacttacACACACACTACCTAACTATCCGAACAAACAACCTGGCCGGAAACCTAAAATATCTGAAGATGAAAATACTGAAAGACCTTTCATGTGTGATCTTTGCGGTGCTACTTTTAGAATAAAGAAATGTCTGGTGAGCCACGAACGCTCGCATACCGATGAGCGTCCTTATTCGTGTTCAATCTGCGGCGCAGCTTTCAAACATAGACATAATCTATCGAAACATGAAAGAATtcatattaatgaaaaaccaTTTGTTTGCTCGTTTTGCGGCGGTAAATTCAGCCTTAAGGATACGCTGCAAAGGCATATGGCCATTCATACCGgcgaaaagaaattcaaatgcGATTTTTGCGACGCTACTTTTATTCAAAAGTTTCACTTGAAATCTCATATGCGAGGTCATACCGGCGAGAAACCGTACGCGTGCGAATtttgcgatgaaaaatataccaataaTACATCACTGAGGAACCATATGCGTTATCATGATGAAGTAAAACCGTATCGCTGCCGTTTTTGTCCCGAAGGATTCCGATCTAAGATTGCTTTATATGATCATATTAGAACACATACAACTTTAACCGGCTCAGatctagaaaatttaattaacgaGCAGAAATTGAACGCTACCGAGCCAATTTGTGCAAATaATGATCCAAAAGCGATTAAACATTTGTTGacaaaagttgaaacgttGGTGGACGCATCATTAGATACAGTGATGAACGTAGACTATGGCATTcaaCAAGTTGATACAacggtgaaaaatttcttgaaaaagcaaattgaaagaaaagcCGGAGGATTTCGTAAGCTGAAAAGACGCGCcgaaaaaatcgtagaaaaaccAGTACGACAGAAAATTCACAAACCAAAAGAACCCAAAGTGTACACCTGTAACGTATGCAATCAAGTGTTTAAACTGAGGAAAGAACTTCTAAAACATAAACCCATTCACGGTGAACCGGAATTTTACAAGTGTTCAATATGTGCCAAAGATTTCAACTCGATGCATAGCCTAAGGCAACACAGTCAAACTCACATagtggagaaaaaattcatttgcgATTACTGTTCGATGCCTTTTCGAACTAAATGTTCTTTACGCCGTCATATAATTCGCCATCTGGGTATAACTCGATTTAAATGTCGATtctgcaaaatgaaaatatttcaaaaacaccACCTAATTGTACATGAAAGAGGTCATACCGGAGAGAAGCCTTTCAAATGCGATATCTGCAATACTTCTTTCATTTCCAAAGGAAACTTACAGCATCATTTACGTAATCATTCTGATAAAAAACCTTTTCCGTGTCAATTTTGTGACGAAGCTTTCAAAACCAGATGGACATTGAATGCTCATATTCGTAAAGAACATTCATCCATTCAAAATGTCAATGTGATGCATTGCGCGCCTGAAAAATTGGTAGTTACCCCGGAATTCGTGAATGCTGTCGATATTGTTACGCAAGAAGAATGTTCCGATTTTGAAATCTCAGATAAAGAAAAAGTCGAATCAAAAGAACTTCTTGGATTAAGAGAAATTCGAACTCGTAGTAGTTTTCACAAAGAGATTTATTCGAGCACCGATAAACTTGTTTCAACCCAAAGTGACGAAGAAGACAATAAGAAAAGAaacAAAAGGAAGCAAACGAAACCCagatgtattaaaaaaacaaaacctgATGTCACCGAAGAAGAAGATAATAATCAAAGCGACGTTGATTTCTCACtggaaaataaagaaaacgaaAATTACGAATCGCAAGGTTACGAATCACGAGACACGTTTCGTGATGATTCAGAGGCTGGTGTCACGAGCGCAGACGATTTAGAGGATATTCCtgttgttgaaaaaaagaaAAGAAGTCGAAAAAGTTCGTCGAAAGGTACAAGCCGAAAAGGACGCCCAAAATCAAAACCAGAACCTGTATCAAGCACCGATAGACCGTACAAATGTAAACGTTGCGATGCAACCTTtgctataaaaaaatgtttagtcaGTCATCAAATTACCCACACCGAAGAAAAACTCCACCTATGTTCGTATTGCAGTGCTAGCTATAAACATAGGCATAATTTACTAAAACATATTCGAGTTCGACACACGGACGAGAAACGTTTTCTGTGTAATTATTGCGGTGCTAAATTCGCTTTGAAAGATTCTCTGGAACGACATACACACACTCACACAAATGAAAGACCATTCAAATGCGAATATTGTCAAGCAACGTTTagtcaaaaatatcacattagGATGCATATAAAAAACCATATGGGTAATAATCCATACTTGTGTACATTCTGTGACGCCACCTTTACCAATCATACATCTCTGACATGCCATATCATTCAGCATACCGGTCAACGTTTCGAATGTCCAGTTTGccatttagaatttaaatcAAGACAGAGTCTTGGACAGCATCGACGTTTACATTCTCCGGTGCAGAATAAACGTTATCAAACGTTCGACAAACTTTTCCAATGTGATGTTTGTAAACTATCGTACAAATCGCGAAACACGTTGAAAGCTCACTTAATCGCGCATACAGATGAAAAACCACATCAATGTTACATATGCGGTATGATGTTCAAATACAGGCGTAATTTAAAAAGCCACATTTATAATCACACCGGAGAGAGGCCTTACAATTGTGAAACCTGTGGCGCTGGATATCGATCGAGGgctagtttgaaaaatcacctGTTACGTCATAGCGACATAAGACCCCTGAAATGTGAATTTTGCGAGGCCACatttaaatgcaaaaagtCTCTCAAGGAGCATCTTCATACTCACGATGGCGCCTATCAGTTTAAATGCGAACAATGCGATACTTCGTTCAGGCTGAAAAGATATTTGAGACAGCATGTATTGTACTCTCATCGTAGGCCTCCGTCTGTATGTCCGATTTGTAAAGCtgttttcaaatatgaaaGATCTCTTAAACGACACATGCTTAAACATTCCGATAATGTTAATACAAAAGTTGATATGGATAATATAGATACTGCTATGatgtataattattaa
Protein Sequence
MDNSFSNNDCFPALPIFPKLTHTLPNYPNKQPGRKPKISEDENTERPFMCDLCGATFRIKKCLVSHERSHTDERPYSCSICGAAFKHRHNLSKHERIHINEKPFVCSFCGGKFSLKDTLQRHMAIHTGEKKFKCDFCDATFIQKFHLKSHMRGHTGEKPYACEFCDEKYTNNTSLRNHMRYHDEVKPYRCRFCPEGFRSKIALYDHIRTHTTLTGSDLENLINEQKLNATEPICANNDPKAIKHLLTKVETLVDASLDTVMNVDYGIQQVDTTVKNFLKKQIERKAGGFRKLKRRAEKIVEKPVRQKIHKPKEPKVYTCNVCNQVFKLRKELLKHKPIHGEPEFYKCSICAKDFNSMHSLRQHSQTHIVEKKFICDYCSMPFRTKCSLRRHIIRHLGITRFKCRFCKMKIFQKHHLIVHERGHTGEKPFKCDICNTSFISKGNLQHHLRNHSDKKPFPCQFCDEAFKTRWTLNAHIRKEHSSIQNVNVMHCAPEKLVVTPEFVNAVDIVTQEECSDFEISDKEKVESKELLGLREIRTRSSFHKEIYSSTDKLVSTQSDEEDNKKRNKRKQTKPRCIKKTKPDVTEEEDNNQSDVDFSLENKENENYESQGYESRDTFRDDSEAGVTSADDLEDIPVVEKKKRSRKSSSKGTSRKGRPKSKPEPVSSTDRPYKCKRCDATFAIKKCLVSHQITHTEEKLHLCSYCSASYKHRHNLLKHIRVRHTDEKRFLCNYCGAKFALKDSLERHTHTHTNERPFKCEYCQATFSQKYHIRMHIKNHMGNNPYLCTFCDATFTNHTSLTCHIIQHTGQRFECPVCHLEFKSRQSLGQHRRLHSPVQNKRYQTFDKLFQCDVCKLSYKSRNTLKAHLIAHTDEKPHQCYICGMMFKYRRNLKSHIYNHTGERPYNCETCGAGYRSRASLKNHLLRHSDIRPLKCEFCEATFKCKKSLKEHLHTHDGAYQFKCEQCDTSFRLKRYLRQHVLYSHRRPPSVCPICKAVFKYERSLKRHMLKHSDNVNTKVDMDNIDTAMMYNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-