Fvir016700.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ferrisia virgata
Gene Symbol
-
Assembly
GCA_900060175.1
Location
FIZR01002549.1:23940-28445[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 1.5e-05 0.0014 19.1 0.6 1 23 152 174 152 174 0.98
2 36 4e-06 0.00036 21.0 1.0 1 23 211 233 211 233 0.97
3 36 1.8e-05 0.0016 18.9 1.5 1 23 249 271 249 271 0.98
4 36 0.0084 0.76 10.5 0.8 1 23 276 298 276 298 0.97
5 36 0.0017 0.16 12.7 1.9 1 20 304 323 304 326 0.92
6 36 0.16 14 6.5 6.2 1 23 331 353 331 353 0.94
7 36 1.3e-05 0.0012 19.3 2.2 1 23 359 381 359 381 0.98
8 36 0.00018 0.016 15.8 2.8 1 23 385 407 385 407 0.99
9 36 0.0068 0.62 10.8 0.4 1 23 523 545 523 545 0.98
10 36 0.00059 0.053 14.1 5.4 2 23 552 573 551 573 0.96
11 36 0.0089 0.8 10.4 0.4 1 23 576 598 576 598 0.97
12 36 1.5e-05 0.0013 19.2 3.9 1 23 603 625 603 625 0.99
13 36 7.2e-08 6.5e-06 26.4 1.1 1 23 629 651 629 651 0.99
14 36 0.00057 0.051 14.2 2.2 1 23 655 677 655 677 0.99
15 36 2.3e-05 0.0021 18.6 1.4 1 23 681 704 681 704 0.97
16 36 4.2e-05 0.0038 17.7 3.3 1 23 709 731 709 731 0.98
17 36 0.021 1.9 9.2 3.9 1 23 735 757 735 757 0.99
18 36 4.5e-06 0.00041 20.8 5.2 1 23 764 786 764 786 0.98
19 36 0.019 1.7 9.4 3.1 1 23 790 813 790 813 0.96
20 36 0.00012 0.011 16.3 3.2 2 23 846 867 845 867 0.97
21 36 0.00025 0.023 15.3 3.9 1 23 870 893 870 893 0.97
22 36 2.4e-05 0.0022 18.5 0.6 3 23 901 921 899 921 0.96
23 36 0.0057 0.52 11.0 1.8 5 23 928 946 927 946 0.96
24 36 2.1e-05 0.0019 18.7 4.1 2 23 952 973 951 973 0.97
25 36 0.00056 0.051 14.2 2.6 1 23 979 1002 979 1002 0.95
26 36 4.8e-06 0.00043 20.7 2.2 1 23 1010 1032 1010 1032 0.96
27 36 8 7.2e+02 1.1 7.2 1 23 1036 1058 1036 1058 0.88
28 36 7e-07 6.3e-05 23.3 3.7 2 23 1065 1086 1064 1086 0.97
29 36 1.4e-06 0.00012 22.4 1.3 2 23 1101 1122 1100 1122 0.96
30 36 0.00019 0.017 15.7 0.9 1 21 1128 1148 1128 1151 0.90
31 36 0.021 1.9 9.3 2.6 1 22 1157 1178 1157 1178 0.95
32 36 0.014 1.3 9.8 3.0 1 23 1185 1207 1185 1207 0.97
33 36 9.2e-05 0.0083 16.7 0.6 1 23 1213 1235 1213 1235 0.98
34 36 0.034 3.1 8.6 0.9 2 23 1242 1263 1241 1263 0.95
35 36 0.0059 0.53 11.0 6.2 1 23 1267 1290 1267 1290 0.97
36 36 0.0045 0.41 11.4 0.3 1 23 1296 1318 1296 1318 0.98

Sequence Information

Coding Sequence
ATGTACTCCGGCCCAAatatattgcaaaattttAATGGGAACAAACAATATCAGTTTTCATGCAATGAGGAAATACCGAAAATTAAAGTGGAAAAAGAAGACGAATATGAGAATCCGGTAAATGCTGAAAATGACTCTTCTTACCAAGATGACAACGATAACGTCCCCTTCAATTTGACGGTAGaacataaatcaaaaattcttgaaaaagagcATGATTTATCAGCGGCTGATAAATTACAGgattttttcaaaaatgaaggaaTACGATTACCTCGTGGTACGGAGATTCTTATGGCACCTTCGAAGTCTTCAGGTGGTGTATATAACAACCATACGAATGAACCAAGTTCGAACGAAATGGCTGACTTCGCTTCAACGCTGCACTACCCACCATTCGTACCAAACttagaagaaaaatcgttacaaGCTGCGCcgaaattggagaaaaattacccGTGTACTTTGTGCGATAAAGCATTTAGTACAAAACTGTTTCTCGAAACACATCTTCGCTTGCATACTTTAGAATCGCTTCCAGAACATCAGCTAAGCTTGGAACGTGAACTCGATCTGCATCGAGAATCATTAAACGTGTTACCATCGATGGATGCTTCATCGTCAGGTGCATTTGCGTGCCCTGTTTGCGATAAGACCTTCAACATGAAACGTTACCTTTCGAATCACTTGCGGTCTCATAATATGAAACTGGTGGAATCAGATCCGAATTTCAACGGCGAATCGTATACTTgtcagcagtgtcaaaaatcgtACACGAAGAAAGCATCGTTTATAGCTCACATGAAAGCTCACGATGATAGGCCGTTCAAATGCGAAATATGTAGTCGTCTGTTTCGCGAAATGAATTCGTTGAACGTGCATCGTTCTTTACATTCCTCTAATTCAAAACACCAATGTACCGTTTGCGGgttgtatttcaaatttcgatcTCAACTGAAAATTCACGAATGGACCCATAGTAATAACAAATTCACTTGTAAATtctgtggtaaaatttttcgtaattatttcTCGTGCAAAAGTCACGAAAATAACCACGTGAACGGCAAACAATTCGTATGTTCCTTTTGCCAGAAAACTTTCAAGTACAAGGTGGCTCTTAAAACGCATTTATTAACCCATACCAGACCTTACAAATGTGATTCGTGTAATCGTACATTCGATAATTcgattaaattacaaaaccacaaaaaaagccacctgtttgaaaaattccaattgaatATTTCCGAAAGTTCAGAAGATCCTTTAGCTTCTAATAACTCAGCTTACGTTAAACTCGAACCGAATGAAGAATACCCGATAGCGAGTTGTAATAATTCGCCGCAAACGTCGGAAACGCTGGAAAAATCTACCGATGAACAGCAGATTAACTTTTTACCAGATTGTAGTGCTTATGACGATGCTGCGAAGTCGGAGACCGTTGTTGATGAttgtttggtgaaaaatttacaactacATTTCTTGGAAAGTGATGAAAACGATGGCAGTGAGAATAATATTAGAGATTTTACAAACTGTGATGATAAATCTAATGTTCCATTGTATTCTTGTCAATATTGCCAAGTCGATTTCAAGATGTTGGAGgaatttcaaggtcatatgGCGTCTCACGAGGGTAGACTAAACCTCAACTGTAAACATTGCGGACAACTTTTTAaacggtttaaaaaattggaaaagcaTTTACGCAAACATAACGAGTACAAATGTGAAAGGTGTATAAAGAGTTTTGAAACCGAAGCAGAACTATTGCAGCATACAATTTACCATAAAGACGAATCTTTCAAATGTAACTACTGCGATAGCATGTTCACTAATAAGTACACCCTTCAGTATCATATTAAACGTCATTTAAAACGCTACCGTTGCAAATATTGTCCGAAAAGTTTCGATAACGAAAGTCAACTCGAGACCCATATAAATACCCATCAGTCTGTATACAAATGCGACTTTTGCGATAAGGATTTCAAGTTCAATTCGTTTGTGTTGAATCATCTGAAGATACACACTAGACCATATAAATGCGATCAATGCGACCGATCGTTCGATAAGAGCATTACGTTGTCAAGGCATCAGAAAAACGCTCACGCACCGACTCCTTTCATCTGTCACATTTGCGAACGATCGTTCAACTACGAATCGACGTTTAATTCGCATCTACGTAGCCATAATCGCCAGTACCAGTGCGTTTATTGTATGCGTAGCTTCGACGACGAAAACTGCTACAACAAGCACGTACGACGTCACGAGATGAAGTTTACCGAATTTAAATGCGAAAAATGCGACAAGAAGTTTAAATACCATTCGCAGCTGCAAgttcatattaaaaatcatggaaacGTGTACCGCTGCGAAGAATGCCAAATCGAATTGAAACACTGGAAGAGTTACGAAAAACACAAGAAACTGTTCCATGGCTCGCAGCAAGAAGAACCTTCTGTCTGTTCGGAGTCGACTTCGCAAGAGAACGGTGCTACCACGTCCACCGCTACCATTAAGAACAAAGTGCAACGTTGCCCGAAATGCCCTAAACAGTTTAAATACCATTCGCAGCTTTTGttacacttgaaaaatcacaaaacacATCGTTGCGACGAATGCGatcagcaattcaaaaattacaaatcatATCAAAAGCACGTACGAGTTCAGCATGAACAAAGTCAAGAGCTCGCTTGTACCCAATGCGATGCGAAATTCAAGTACCAGAGTCAACTGAAAAACCACATTGAATCGCATAATCGTAAGTACGCTTGTGAATGCGGAAAAACATTCAATTCGCGGAAATACTTCATCAGCCATCGTCTTTCGCACGCCACCGATAGCTTAAAATGCGAATACTGCGATAAACAATTCAAGTACCATTCTACTCTGAAGATACACCTTAAGTCGCACCAAAAAGAGAGCATCTTCCAGTGTTTTCATTGCGaacgtattttcaaaactaaatgGAAAGTACAACGTCATATCGAAAACGTTCACCtacgcgagaaaaaaatcgaatacgtTTGCGAGATATGCAAAAAGTCGTTTAGATACCAATCTCAGCTCAAATTACACACTACTCAGCACGATAAAACCTACTCGTGTAAACTTTGTGATCGTTCGTTCAACTGCAAACGTTATTTTCTGTTTCATACGCGAAAACACAACAACGCTTCGTACTTAACATGCTCTCATTGCGGTAAAACGTTTAAATACAATTCGCAGCTACGTATACATCTGAAATCGCACGCTAAAGGTAATAATCCAGCCTATCGAACACAATGCTCTTGGAATTGTAATCTGTGCGGTAAACGGTTTAAATTTCGTTCGTTGCTGAAAAATCATATGATGATTCACGAAGGAGTTAAACCTTACCAATGTAACTATTGCGGTAAACGATTTGCTTGGAAAAGTAGCCTTCAGATACATTCGTCTTTCGTACACAAGCACAAGACACGTTTCTATTGCCAATCTTGCGacagatattttttctacgaaaGTCAGTACAAGCAGCATATGTCTACGTGTCAGTGGGATGTATCGTTCAACTGCAAATATTGcgaaaaacaattgaaatcgCGCAAAACCTACGAATTGCATTTACTCAAACACGAAGGTACAAAACAGTTTATTTGCGCGTACTGCGAAAAAGCTTTTTACACTAAACAAGTGCTTCTCAATCATATTAAAACTCATCTCGAAAGAGAAACCAAGACGTGTCCAATTTGTAACGAACAATTTACCAGCGACTTTCGTTACAACAGCCACGTGCAAAATCATTACGACGAGTTCAGATGCGATATTTGCGACAAAGTTTTCAAATGcaagtataaaatgaaaagacaTTTTATGACTACTCATCAACCGAATTCTACCTATTCGTGTCAACAATGcggcaaattatttttacgcgAAAGGGCTCTCGTAAACCATCAAGCCACCCATTACGTTGCTGGCCATATCCGAAACGATGAGAATAAACCGTACGAACAAGTGGAAACTTTCGACGAAACTTTATCAGAAAAGTATCTTCCTACTGATGAACAGATTGATTGTAAACCGGATCTTTCCGAGTTGGACATTTTAGTTCCAGAAGTGATTTacgaaaaccatttttaa
Protein Sequence
MYSGPNILQNFNGNKQYQFSCNEEIPKIKVEKEDEYENPVNAENDSSYQDDNDNVPFNLTVEHKSKILEKEHDLSAADKLQDFFKNEGIRLPRGTEILMAPSKSSGGVYNNHTNEPSSNEMADFASTLHYPPFVPNLEEKSLQAAPKLEKNYPCTLCDKAFSTKLFLETHLRLHTLESLPEHQLSLERELDLHRESLNVLPSMDASSSGAFACPVCDKTFNMKRYLSNHLRSHNMKLVESDPNFNGESYTCQQCQKSYTKKASFIAHMKAHDDRPFKCEICSRLFREMNSLNVHRSLHSSNSKHQCTVCGLYFKFRSQLKIHEWTHSNNKFTCKFCGKIFRNYFSCKSHENNHVNGKQFVCSFCQKTFKYKVALKTHLLTHTRPYKCDSCNRTFDNSIKLQNHKKSHLFEKFQLNISESSEDPLASNNSAYVKLEPNEEYPIASCNNSPQTSETLEKSTDEQQINFLPDCSAYDDAAKSETVVDDCLVKNLQLHFLESDENDGSENNIRDFTNCDDKSNVPLYSCQYCQVDFKMLEEFQGHMASHEGRLNLNCKHCGQLFKRFKKLEKHLRKHNEYKCERCIKSFETEAELLQHTIYHKDESFKCNYCDSMFTNKYTLQYHIKRHLKRYRCKYCPKSFDNESQLETHINTHQSVYKCDFCDKDFKFNSFVLNHLKIHTRPYKCDQCDRSFDKSITLSRHQKNAHAPTPFICHICERSFNYESTFNSHLRSHNRQYQCVYCMRSFDDENCYNKHVRRHEMKFTEFKCEKCDKKFKYHSQLQVHIKNHGNVYRCEECQIELKHWKSYEKHKKLFHGSQQEEPSVCSESTSQENGATTSTATIKNKVQRCPKCPKQFKYHSQLLLHLKNHKTHRCDECDQQFKNYKSYQKHVRVQHEQSQELACTQCDAKFKYQSQLKNHIESHNRKYACECGKTFNSRKYFISHRLSHATDSLKCEYCDKQFKYHSTLKIHLKSHQKESIFQCFHCERIFKTKWKVQRHIENVHLREKKIEYVCEICKKSFRYQSQLKLHTTQHDKTYSCKLCDRSFNCKRYFLFHTRKHNNASYLTCSHCGKTFKYNSQLRIHLKSHAKGNNPAYRTQCSWNCNLCGKRFKFRSLLKNHMMIHEGVKPYQCNYCGKRFAWKSSLQIHSSFVHKHKTRFYCQSCDRYFFYESQYKQHMSTCQWDVSFNCKYCEKQLKSRKTYELHLLKHEGTKQFICAYCEKAFYTKQVLLNHIKTHLERETKTCPICNEQFTSDFRYNSHVQNHYDEFRCDICDKVFKCKYKMKRHFMTTHQPNSTYSCQQCGKLFLRERALVNHQATHYVAGHIRNDENKPYEQVETFDETLSEKYLPTDEQIDCKPDLSELDILVPEVIYENHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-