Fvir008876.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ferrisia virgata
Gene Symbol
clz9
Assembly
GCA_900060175.1
Location
FIZR01019538.1:1-4863[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.3e-08 1.5e-05 24.7 0.0 2 34 11 43 10 51 0.92

Sequence Information

Coding Sequence
gaacagagaaaaaacaaatcatcaTACTCCCCAGGAAAGCTCACAAAAGCTGTGAGCCTTATTAAAAATGGATCTCTTACTGCTCATCAAGCAAGTAAGACATTCAATATACCACGAACTACGTTAACGTATAAATCAAATGGCCTCCGGCCAGAAGGATACGTTAAACCAGGGCCAAAACCGATGttagGTTACTCAAATGAACAGATATTGGTGGACTGGGTTCAGCAGTGTTGCAATAAAGGTTTTCCACTGACAAAAGACTCGTTGCTCTATTCAGCGAAGATGCTTTTCCAAGAAGGCCATGGCAAGTTGGTCCATACATTCGATATCGAGAAAGGCCCAGGGCGGAGATGGTATGAAGGATTTATGAGCCGGCATCAAAATTTAACGCTGAGAACAGCAGAATTTTTACATAAGGGTCGAGCGGCAGTAACCGAATCTACCATTCGCAAATGGTTCGaaaatATTATGATGGAATTGAAAGATCATCTTGATATCTTCAAAGATCCACGAAGAATATTCAACACTGATGAGACATGTTTCTTTCTTCATCCTAAAAGTAGACCCGTGCTTGCCACAAAAGGCCAAAAAACGGTGTATGATGCAAGTGGTACTTGTAATAAGGAAAACATGACCATATTAATAACTGGAAATGCTGCTGGAAACATTGCACCACCATTGGCATTGgtttcatacaaaaaaaaaccatctgaTATTGCCGCCACTGCGAATCCTGCATGGTCAATTGGTCGTACAGAAAATGGATGGATGACCAGTCAGAGTTTCTTCGAATATATAGCGAATGTGTTTGAACCTTACCTGAAAGATATTCCAAAACCAGTTATATTGTTCTTAGATGGTCATAGTAGCCACTTATCGTTACAGCTCAGTCGATTTTGTCTAGAAAAGCAAATCATTCTGGTTAGTTTACCACCAAACGCAACCCACATCATGCAGCCGTTAGACGTCAGTTTTTTCGGCCCTCTCAAGAAATGTTGGTCTAAAAAACTAGATCAGTTTAAAAttgagaagaaaattgaacccaaaaaatgtcacatatTACCGATTTTGGAGTCGATTCTTGCCCAGCCCAATTTTAAAGAAGATTTGGAGAGTGGTTTCCTAGCCTGTGGTCTGTACCCATTAAATCCAGACACAATTGATTACACAAAATGTCTATGTaatggatcaaaaataacaCAGAACGATCAGATTGACAATGATGAGGATCGCGATGCATTATTGAATCTGTTTGAACAACGACTGCCTATTTCTCTTAAGAAAAAGTTTGATGAATTGgatgtaaaaacaaaatggcccggaaaaaaagaattggaaggacttttcaatttttataaagctGTGAAATTTAAGTTGAATTACGAAGATTTATGTCCTTCTGATCCGACAGAAAATGGAGATAATTTACACATTATGGTTGGCATTGAGGAATTGACAGAAAATGgtaCAGATGTTGAATTTCCATTTCCAAATTCTGATTTAGATAACATGGATTTCGgtaatgaattaaatttagaTATTTCTGTCACATATGGTGATCTGATCAAACCTCCAACTTCGCTTCCCATTGGTGATGGTGAAAATTCGAACCTCCCAGATCCGCATGAAACTCTTCCAGATTTTACTGCTTGCGTTaatcatttaaattcaaaCCTCCCAGATCCGCATGAAACTCTTCCAGATTTTACTGCTTGCGTTaatcatttaaattcaaaCCTCCCAGATCCGCATGAAACTCTTCCAGATTTTACTGCTTGCATTAATCATTTAAATTCGAACCTCCCAGATCCACATGAAACTCTTCCAGATTTTGCTGCTCACGTCAATTTTGATAATACTAATGATGCCCTAGACCTGACTAATCATTTAAATTCGAACCTCCCAGATCCGCATGAAACTCTTCCAGATTTTGCTGCTCACGTCAATTTTGATAATACTAATGATGCCCTAGACCTGACAATTTCAGTTCATTGTGCTAATTTGAACAAAACACCTGTAGGAACATCCGTAACTCCTCCCTCAGCAGGATCATCGATTTCATCTGGAAGAAGTGTTAAAGAAATCTTAGATTCAATTATCAAGTATAACGGAAAAGAATCGTCACCTGATCAGAGttctgaaaaaagtaaaacagtCCGCAAACGACTGCAACTGCCCTCTGTCATGACCAGCCAGGATTGGATCGCCTTGAAAACTGCAtctgaagaagaaaaaaatgcaaaagaaaaacagaaagaagatcgaaaaaaagacaaggaaatgaaaaaaaaggcagcacaagagaaaaaaaatgaacccagaaagagaaaagaatgtcgaaaaggcaaaaaaaagATTTCAAATGTGGTAGAAAACCCAAAGGAAGTGAATATTGGTGATTGGGTTGTCGTGGAATTTGAGTTACCTAATTCTTCTCCAAGACGCTTCATTGCCAAGATTTACAAATCGTTCAAAGGACGATTATTTGGCGATTTTCTACGGCCAACAAGTAGTAGGCAGAATAAAGGATTCGTCTACAAATACCCAGATGTCAGAGATAAAGccaaagtaaattttaaccaaattaaaaaaattttgccctcgccAGAAGTGCATGGTCGAggtttgtttaaattttgtttaaatgtGAAAGATTTGTGA
Protein Sequence
EQRKNKSSYSPGKLTKAVSLIKNGSLTAHQASKTFNIPRTTLTYKSNGLRPEGYVKPGPKPMLGYSNEQILVDWVQQCCNKGFPLTKDSLLYSAKMLFQEGHGKLVHTFDIEKGPGRRWYEGFMSRHQNLTLRTAEFLHKGRAAVTESTIRKWFENIMMELKDHLDIFKDPRRIFNTDETCFFLHPKSRPVLATKGQKTVYDASGTCNKENMTILITGNAAGNIAPPLALVSYKKKPSDIAATANPAWSIGRTENGWMTSQSFFEYIANVFEPYLKDIPKPVILFLDGHSSHLSLQLSRFCLEKQIILVSLPPNATHIMQPLDVSFFGPLKKCWSKKLDQFKIEKKIEPKKCHILPILESILAQPNFKEDLESGFLACGLYPLNPDTIDYTKCLCNGSKITQNDQIDNDEDRDALLNLFEQRLPISLKKKFDELDVKTKWPGKKELEGLFNFYKAVKFKLNYEDLCPSDPTENGDNLHIMVGIEELTENGTDVEFPFPNSDLDNMDFGNELNLDISVTYGDLIKPPTSLPIGDGENSNLPDPHETLPDFTACVNHLNSNLPDPHETLPDFTACVNHLNSNLPDPHETLPDFTACINHLNSNLPDPHETLPDFAAHVNFDNTNDALDLTNHLNSNLPDPHETLPDFAAHVNFDNTNDALDLTISVHCANLNKTPVGTSVTPPSAGSSISSGRSVKEILDSIIKYNGKESSPDQSSEKSKTVRKRLQLPSVMTSQDWIALKTASEEEKNAKEKQKEDRKKDKEMKKKAAQEKKNEPRKRKECRKGKKKISNVVENPKEVNIGDWVVVEFELPNSSPRRFIAKIYKSFKGRLFGDFLRPTSSRQNKGFVYKYPDVRDKAKVNFNQIKKILPSPEVHGRGLFKFCLNVKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-