Fvir008391.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01018125.1:248-1733[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-08 1.8e-05 24.5 0.0 5 39 22 56 20 60 0.92 2 2 3.5 1.6e+03 -0.9 0.0 17 28 294 305 292 307 0.87
Sequence Information
- Coding Sequence
- ATGCCAAGAAGCTATGTGAAGATGTTGGGGCCAAATCGGAGGCTAAattatgatcaaaaatatctaCTAGCAGCTGTTGCTgatgttaagaaaaataaaaagtctaTGAGTTCCGCTAGTATTGAATGGGGTGTACCCTATACAACTCTACATCGATGTGTTCAAGGTGTTACAGGCGTAGTAAAGAACCGCATGGGTGGACAAACTGTTCTGAGTGCAACTGAAGAAGAACTATTGACAGAAGCTTTGATTTTATGCAGTGAATGGGGATTTCCGCTTGATAAGAGAGATGTTCGAAATGtagttcaaaattatttgaatagaGTCGGGAAAACGACGAAATTTACTGATAATAGACCTGATGTGGATTGGATGAATTCGTTTCTTGCCCGGCAACCAGCATTATCCGAACGTATGGTCGAATGTATAAAAGGAGCGAGAGCTGGGGTCACACCAGAAACCATACAAGCATATTTCGACAAACTGAAAGTTTCATTAGAAGGTATACCACCATGCAACATCGTTAATTACGATGAGACAGCATTTGTTGACGATGTTAGGACTGTGAAATGTGTTGTGAAACGAGGTATACGTCATGCCGAAATGATTAAAGATACTTCAAAAACGAGCATTTCCGTTATGATGTCAATTGCTGCCTGTGGTACAGTTCTACCTCCATATACAATCTACAAATCAGCCGAAATGTTTTCCACTTGGACTTACAATGGCGTTCAAAATGCCGGCTATAATAGAAATAAGTCTGGGTGGATGGAGACAACTATTTTCAGTGATtggttcgaaaaaattattcttcctTATTTTCGTAGACTGGATGGCAAAAAGACGTTAATTGGTGATAACTGTTCATCTCATGTATCTCTGTCTGTAATCGAAGCGTGTAAAAAACACAATATAACGTTTATACTTTTACCACCTAATACCACTCATCTCACTCAACCACTTGACGTCGCATTCTTCAGAGCAATCAAGGAACATTGGAGAAATACTTTAGATGACTGGAAAAAGTTTCACCGCGGAGCTGTTCAAAAAGATGCATTCCCAGCGTTGCTTGCCGAAGTGTACAGAAAATTGGGCTTATTGACCTCAAGATTCCCTAATCAGAAGGTTCTTGTCAACTGCAAAGAGGACAAAGTTGAAAACAGCAGAGGTATGCAGAATGCGATTTCAGGGTTTTCCTCCTGTGGAATTGTACCACTCAATGCCaacaaagttttaaaaaaaaaagagcgaaGACAGCctctcaacaaaaaaaaaaaaaacaaaaaacgccGTCACCGGAATGTGTTGCCATGGTGGAATCCTTTAAATTGTACCTAG
- Protein Sequence
- MPRSYVKMLGPNRRLNYDQKYLLAAVADVKKNKKSMSSASIEWGVPYTTLHRCVQGVTGVVKNRMGGQTVLSATEEELLTEALILCSEWGFPLDKRDVRNVVQNYLNRVGKTTKFTDNRPDVDWMNSFLARQPALSERMVECIKGARAGVTPETIQAYFDKLKVSLEGIPPCNIVNYDETAFVDDVRTVKCVVKRGIRHAEMIKDTSKTSISVMMSIAACGTVLPPYTIYKSAEMFSTWTYNGVQNAGYNRNKSGWMETTIFSDWFEKIILPYFRRLDGKKTLIGDNCSSHVSLSVIEACKKHNITFILLPPNTTHLTQPLDVAFFRAIKEHWRNTLDDWKKFHRGAVQKDAFPALLAEVYRKLGLLTSRFPNQKVLVNCKEDKVENSRGMQNAISGFSSCGIVPLNANKVLKKKERRQPLNKKKKNKKRRHRNVLPWWNPLNCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -