Fvir005413.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01004027.1:8861-9430[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-10 3.1e-07 30.1 0.0 1 35 18 52 18 58 0.92 2 2 0.31 1.4e+02 2.4 0.0 25 41 139 155 138 157 0.88
Sequence Information
- Coding Sequence
- ATGGTTCGAACGTATGAAAGACAGTTGGGCAGTCGAAAATATGCAGACTACTCGCCTGAAACTTTGGAGAAATGTTTGAAAGAAGTCGCAAAAGGTACGCTATCTCAGAGAGCTGCCGCCGAAAAGTACCAAATACCGAGGTCtacactgaaaaataaattacaaaacccACATTCCGGTACTATTGGTCGCCAAAAAGTATTCAGTgctgaagaagaagaatgtTTTGTGCATCATCTTCAAGGACGAACTGAGccaagatttaaaaataacataccAGGTACAGAATTTGTCCtgggatttttgaaaagtgacaCCATTTTGACCAAGAGGCTCAGCACCAACAATAATAGAGTTCGATTGGGTTCAACTGAAGAAACATTGACTGaatatatcgaaaatttacGCATCGAATTGCACGGAATCCCTCCTAATCAGATATGGAACTATTATGAGACCAATCTTACAGACGATccgggtaaaaaaaaaaagtaa
- Protein Sequence
- MVRTYERQLGSRKYADYSPETLEKCLKEVAKGTLSQRAAAEKYQIPRSTLKNKLQNPHSGTIGRQKVFSAEEEECFVHHLQGRTEPRFKNNIPGTEFVLGFLKSDTILTKRLSTNNNRVRLGSTEETLTEYIENLRIELHGIPPNQIWNYYETNLTDDPGKKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -