Fvir018415.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- bab1_1
- Assembly
- GCA_900060175.1
- Location
- FIZR01015039.1:3514-8827[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-16 1.5e-13 50.3 0.0 1 43 39 82 39 84 0.95
Sequence Information
- Coding Sequence
- ATGCCTGATAGTTACCAGTATCAATTACAATCGATGTGGCAGAAATGTTGGAACACGAACCAAAGCCTAGTACATAATTTGAGATTCCGCGAACGTGGACCGTTGAAATCGTGGAGGCCCGAGACAATGGCCGAAGCCATACTTTCAGTACTAAAAGAAGGATTATCGCTGTCGCAGGCTGCCAGAAAATACGATATACCATATCCGACCTTCGTTTTATACGCCAACAGGGTACATAATATGTTGGGACCTTCGGTAGATGGAGGATCTGATTTAAGGCCTAAAGGCAGAGGCAGACCTCAAAGAATACTACTCGGTTATTGGCCCGAAGACCATATACAGAATGTGATAAGAGCTGTAGTCTTCCGAGATCCTCAACATATCAAAGACGAACCACTTAATTTAGGTTACCCCAGATTATCGTGCTTTCAAGAACCATTGAGTATGTACGGAAATAATAACTCTTGTCTAAATAGTCCCGAGCCGCCGGTATCTCCTAATTCGACGGCGGCTGTCATTGCGATGGCTGGTCTGCGACAACAAGTGCTGGCCGCAGCCGCCGCCCACAGCAACAGCGACAAtaatttcggatttttttcgTCTCAATGTGCCAACGGAAGTCCTAGTCTGTTGATGACCACTCCATTGCAAAGTCCTAACAGTACACCTCCGGCTTCACCCGtttctaatgaaaatttagagGTAGGCATCGGTGTAACAGGCGTTCCTTTCAAATCAACCGATAACTTTCCAGTCAAGTCTGAGATGCTGTTTCAAGACGAGATTGAAGACTTAGTTATGAAATCACCTCATTCGCGAACTCCTACATCTTCGGCCGAACAACCTAAACCTCTACCATTAGTCTTAGAACAACGAagcgattga
- Protein Sequence
- MPDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSVDGGSDLRPKGRGRPQRILLGYWPEDHIQNVIRAVVFRDPQHIKDEPLNLGYPRLSCFQEPLSMYGNNNSCLNSPEPPVSPNSTAAVIAMAGLRQQVLAAAAAHSNSDNNFGFFSSQCANGSPSLLMTTPLQSPNSTPPASPVSNENLEVGIGVTGVPFKSTDNFPVKSEMLFQDEIEDLVMKSPHSRTPTSSAEQPKPLPLVLEQRSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194221; iTF_01150253; iTF_00669462; iTF_00005299; iTF_01262355; iTF_01472371; iTF_00170581;
- 90% Identity
- iTF_01262355;
- 80% Identity
- -