Fvir015635.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- retn
- Assembly
- GCA_900060175.1
- Location
- FIZR01003043.1:27304-37118[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-20 1.2e-16 61.0 0.1 11 89 31 108 19 108 0.85 2 2 0.9 2.6e+03 -0.9 0.0 5 61 136 197 132 221 0.59
Sequence Information
- Coding Sequence
- ATGAATGAGAACCTTACCGCAGCATCCACCGCACCACCCAGTCGAGACGTTGTTAAATGGAAACTTATCACTTCCATAAAGAAGGTTTACAATACGTCGAGATCTCGTTCGCAAACTCCTGTAACCAGGCTGCCAATAATGGCGAAATCCGTATTAGATTTGTACGAATTATACAAATTAGTGGTACAAAGAGGTGGTCTCGTGGACGTTATCAATAAGAAATTATGGCAAGAAGTTATCAAAGGATTGAATCTTCCATCGTCTATAACGTCAGCAGCTTTCACATTACGCACACAATACATGAAGTTCCTATATCGCTACGAATGTCACAAATTGGATTTGAGTAAACCTCACGAACTGCAAGCGGCCATCGAAGGAAATAAACGCGAAGGCAGACGAACCAGCTATTACGGAGAATTAGGCCAGATGCACAGTCCGAATAGTAACGGGCCTAATAACGGCCATCCTCCTACATCTTTGCATCACGGTCAATCGCAAATGTCGCCGGTTAGTTTGGTAACCACTTCCACCTCGAACACCGGTAGCAATCGTCTACAGATGAATGGCCATTCCAACCAGTTTGGTAGTCACACTGGTAACGCAACCATTCCTAGCGCTCACGGTATATCTCCTTTAATATTGCAAGGTTTGTACGAGTACCATATTATCTTCTTGATCTTATGTGTAAATTTAGATACCTTACTTACTTGcgtcgattatttttaa
- Protein Sequence
- MNENLTAASTAPPSRDVVKWKLITSIKKVYNTSRSRSQTPVTRLPIMAKSVLDLYELYKLVVQRGGLVDVINKKLWQEVIKGLNLPSSITSAAFTLRTQYMKFLYRYECHKLDLSKPHELQAAIEGNKREGRRTSYYGELGQMHSPNSNGPNNGHPPTSLHHGQSQMSPVSLVTTSTSNTGSNRLQMNGHSNQFGSHTGNATIPSAHGISPLILQGLYEYHIIFLILCVNLDTLLTCVDYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -