Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: ush
Assembly: GCA_963576555.1
Location: OY754958.1:25747804-25753999[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.011 1.7 10.1 0.0 1 20 206 225 206 227 0.90

2 9 0.00023 0.034 15.4 0.8 1 23 273 295 273 295 0.98

3 9 0.024 3.7 9.0 1.0 2 21 320 339 320 340 0.92

4 9 0.039 6 8.4 2.9 2 21 704 723 703 724 0.93

5 9 0.0071 1.1 10.7 0.0 3 21 761 779 759 780 0.92

6 9 0.98 1.5e+02 4.0 0.1 1 23 826 848 826 849 0.65

7 9 0.011 1.7 10.1 1.3 1 23 854 876 854 876 0.99

8 9 0.00011 0.017 16.4 0.5 1 23 949 972 949 972 0.96

9 9 0.34 52 5.4 0.7 2 20 1103 1121 1102 1123 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.011	1.7	10.1	0.0	1	20	206	225	206	227	0.90
2	9	0.00023	0.034	15.4	0.8	1	23	273	295	273	295	0.98
3	9	0.024	3.7	9.0	1.0	2	21	320	339	320	340	0.92
4	9	0.039	6	8.4	2.9	2	21	704	723	703	724	0.93
5	9	0.0071	1.1	10.7	0.0	3	21	761	779	759	780	0.92
6	9	0.98	1.5e+02	4.0	0.1	1	23	826	848	826	849	0.65
7	9	0.011	1.7	10.1	1.3	1	23	854	876	854	876	0.99
8	9	0.00011	0.017	16.4	0.5	1	23	949	972	949	972	0.96
9	9	0.34	52	5.4	0.7	2	20	1103	1121	1102	1123	0.91

Sequence Information

Coding Sequence: ATGTTCCAACAAACGACAGACATTCGAGGAACATTGGCGCGAACACGGTTTGGAGGAAATGTTTGTGTCACCATATACCAACCAATTGCTCAACGTATAGTAAaaacaAAAGATCTAAGCCCCAGCGATTTGAATGAGCAAGCTGATGCGGTGTCTTCGGCGGACATAGATCAATCAGCCGAACCGCGCACTCCTTTTACAACAGAATCCTTAATGGACGAGCATCGTCCGTCGTCGAGTACTCCTCGAACGCTTTCACCGCCCTCAGATCCGGAAGGCGAAGAACACCACAATTCTCCGTCGGGGAGGTCAGATTTACTGTCGGCAGGGAATTCACCCTCTGAGCATGATGATTCATCAATAGTTCCTGCCGCTGCTGCTATTGCTGCGATTCCTAAACTCCGACTAAATGCTCTTTTAGCCTCGGACCCTGCTCTTAATCCAGAtgcgagaaatttaaaaattcttcacgAGGAGTCTACCAAGAATCATCACCTTGAGGaagctgcagcagcagcagctggtTCTTCCACGCCAGTCGCAGTTGATCAAAAGGCTGCGACAAAAAATCCAACATCAGCTGTTGTTGTTGACAACGCGCAGCGGGTGAAAGTGTTTATGTGTCTTCCATGTGGCATTGGGTTTTCGTCGAGGTCTACACTGGAGGCACATCAGGCGTACTACTGTTCCCACAGAAAAGAAGCAGAGGAAGATCCAGCTGGGGTAGGTGCCGCTGGAAATACCTCATCAGGAGATAAAAATTCCACCATAACATCCGGTGAGCCATCAGCGAAATCTATTAAGACTGGCAAGCAGTACGCTTGCACACAGTGCTCATACAGTGCCGACAAGAAGGTCTCGTTAAATCGTCACATGCGTATGCACCAAAGCTCACCGGCACCAAGTTCGAACACCTCGAATGGTGGCGATGATAGTTCTAGTCAACAAATCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTTAAAACGTATCGGGCACATAAGCAACACTATTGTAGTTCCAGACGCAATGATGGTCAAACGACACCAAAACTTCCAGAACCAAGTTTAAAAACGAGTGGCGGATCCGTAAGTCCACCGCAGGCACGAACGAAAACGCCAACTCCAGCTGCTGTTGTGGCAGCTGCAGCCGCAGCAGCCGCGGCCGTAACACCCCAGCCATTTATTGCGCTACCAACAAATCCTATTCTTATTATTCCATATTATCTAATACGAGCGGCCAGTATGATACCGGGACCATTAACATCGGTATCGTCGGGCATTGCAAATCCCGAAAGCACTTGTTTCTCACTTGAAAACGGATCTCTAAAGCCAATGGCGACCGCCTTAAGCACCAGCATTACAAATAATCAAATTCCGCATGTTGAAGCCGCGCAACGATCGCATCCCCCACCACCAAGTACTCCATCGAATAATGAGGCCGCAACGCCATTACTTACGGAAAAAAATACACGCGCAGCGTCTGCAAACAGTTGCAGTGATTCAGTtgtaaagcaaagcaaaaaggAGGGCACAAGGGACTTTGCACCACTAGATCTCTCTCTGAGACGTTCTCCCATACAAAGAGCACAACGCATTCGCTCATCTTCAAGTTTCATGCAACCAAGTGATGAACGGATCGATATAGAAACAATGATGGAGGGCAAGGAAAATCTATCCATCGACAGTGGTAGCATGACACCTGAACAAATTGTTTGTGCGCCGTCACTACCCAACAGTCCCTCCATGAGTCCATCGCCGAAACGACGCGCTCTCAGTCCACGAAGTAGCAGCGCGGCTTCAATGTCACCAGTGCCGCCCTCTGTCCTGGATCATCTTCCGTTGAGGTCGATTCTACCCGCTGACATTGCCATGAAACTGACTGACACAAATATAATTACCCCGCTAATCGCTAAACAGAATCTAGAGCTGGCCTTTAAGCTGTCTTCCGCTGCAGCGGCTGCTTCGGCCAACAGTAAGCAAACCGATTCGTCAAAGGCGACAATGAGTAACTCAATTCTAGGTCTGCCTGGTGCGCCTATTAATGTTGGAGCAGCTTCTAGTGGGCAGCCACAGATTTTCGTCAAACAAGGCGTCTCCAAGTGCAAGGAATGCAACATCGTCTTCTGCAAGTACGAAAATTACTTGGCTCATAAACAGCACTATTGTTCGGCTAGAAATCAAGAGGATACCGAAAACAAGATTAGTACTCCTCCTTCGGCATCGAATTCCGGCGTAGATACCAATCCAATTGCGTATCAACAGCTGATCTGCGCAGCATGTGGCATCAAATATACTTCCCTGGATAATTTGCGGGCACACCAGAAGTTCTATTGCCCCAAGGGAGGTGGTGATGCCGCTGCTGCACCGCCAATCGCAAAGgaaaaatgtgcaaaatgtAAGACACTCCATGAAATCGGTCAGGCTTGTCCACCAATAGCTGCTTCTGCCGCGCAACAAAGTTCCTACAAATGTCCAGTGTGTGATGTCGTGAGTCTTACCACTGCAGAGAGTCGAAAGCACTTGGAAACTCATGGCAGTGTCAAGGCGTTTCGCTGCTCCATTTGTCGATACAAAGGAAATACTTTACGTGGCATGAGGACACACATTAGGATGCATTTTGACAAGAAAACATCTGACTTCAACGAGGAAAACTACATGTCATGCATATTAGAAGATGACGGCTTGGAGATTCCCAGTCCCGCGTCTGTAAATCAGGAACAAGTGTCACAATTcgcacagcaacaacaacatttgttgcagcagcagcaacaacaacaacaacaacattcagCAATACACCAACAGCATTCGCCACAGCAGCCGCAACAGATATACAACTgtgaaatttgcaattactcATCCTCCTACAAGGGTAATGTGATGCGTCACATGAAGCTGGTTCATTGCCAACCTGGCACATCGCCTTCCCTTTCTCCCGAAATGATGGTGGAAGATGGTGCTGATCACACCACTCACAGCCTAAACGGAGGTGACAATGGTAGCAGCCTCACCGACAGTTTCACCATAAAAACGGAACCACTAGAGCCTGCCGCCATCGCTACCATAACCAAGAACAATAACAACTCGACTCCAAATCATCATCTGCTGGAACCACTGGTACACATCAAATCAGAGCCAATCGAAGTCCAAGACAGTGTTATTAGATCTCTGCCGTCTCCACTATCAGTTCCACCGCCACCGCTAAATTCATCATCGCCCCTATCTGGCGATGAAAACTCATTGTTGAGGAATTCTGCTTCGATTGGCTCCAGCGGATTGCATTTCAATCAGAAGTACTGTCAAACCTGTGACATTAGCTTCAACTACATGAAGACCTACCTAGcgcataaacaattttattgcaaGAACAAGACTCGCGGAGATTCCGACAGTCCGAGTCCTGTGCCGCCAGTGCAATCGCCAACTATGTTGAATAAGAACAAAGAGAACTTGGAAGCGGCATTGCTATAG
Protein Sequence: MFQQTTDIRGTLARTRFGGNVCVTIYQPIAQRIVKTKDLSPSDLNEQADAVSSADIDQSAEPRTPFTTESLMDEHRPSSSTPRTLSPPSDPEGEEHHNSPSGRSDLLSAGNSPSEHDDSSIVPAAAAIAAIPKLRLNALLASDPALNPDARNLKILHEESTKNHHLEEAAAAAAGSSTPVAVDQKAATKNPTSAVVVDNAQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEEDPAGVGAAGNTSSGDKNSTITSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNTSNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLPEPSLKTSGGSVSPPQARTKTPTPAAVVAAAAAAAAAVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSSGIANPESTCFSLENGSLKPMATALSTSITNNQIPHVEAAQRSHPPPPSTPSNNEAATPLLTEKNTRAASANSCSDSVVKQSKKEGTRDFAPLDLSLRRSPIQRAQRIRSSSSFMQPSDERIDIETMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASMSPVPPSVLDHLPLRSILPADIAMKLTDTNIITPLIAKQNLELAFKLSSAAAAASANSKQTDSSKATMSNSILGLPGAPINVGAASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDTENKISTPPSASNSGVDTNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDAAAAPPIAKEKCAKCKTLHEIGQACPPIAASAAQQSSYKCPVCDVVSLTTAESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPASVNQEQVSQFAQQQQHLLQQQQQQQQQHSAIHQQHSPQQPQQIYNCEICNYSSSYKGNVMRHMKLVHCQPGTSPSLSPEMMVEDGADHTTHSLNGGDNGSSLTDSFTIKTEPLEPAAIATITKNNNNSTPNHHLLEPLVHIKSEPIEVQDSVIRSLPSPLSVPPPPLNSSSPLSGDENSLLRNSASIGSSGLHFNQKYCQTCDISFNYMKTYLAHKQFYCKNKTRGDSDSPSPVPPVQSPTMLNKNKENLEAALL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: -
80% Identity: -