Fcup022864.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:31302542-31304239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 1.9 10.0 1.6 3 23 201 222 199 222 0.95 2 10 0.019 2.9 9.3 0.1 6 23 231 248 231 248 0.98 3 10 0.00032 0.049 15.0 6.0 1 23 254 277 254 277 0.96 4 10 0.2 30 6.2 2.8 1 21 287 307 287 308 0.94 5 10 0.00062 0.094 14.1 2.1 3 23 320 341 318 341 0.90 6 10 0.00038 0.058 14.7 0.7 3 23 349 369 348 369 0.96 7 10 0.0072 1.1 10.7 0.0 2 23 377 399 376 399 0.93 8 10 0.00032 0.048 15.0 0.6 1 23 407 430 407 430 0.94 9 10 3.2e-06 0.00049 21.2 4.3 1 23 436 458 436 458 0.98 10 10 0.00072 0.11 13.8 9.6 1 23 464 487 464 487 0.96
Sequence Information
- Coding Sequence
- ATGCTCTGTAGATTATGTGTAAACGAATGCaatgattttgtaaatattttcgatGGTGATGGTCTTAAAAATGACGTTATAAACCTCATAGCGACCTATTTTACATTCCAAGTAACACAAAATGACGAACACTCGACTATCATCTGCCGGCATTGCTTGGACAACCTTTGTAATTTCTACTCATTTTGTTCTGATGTCGAAATTGCTCAAGAAAAGTGGCAAGTTATACTTGATCTAGCGGAAGcagataataaaaaacaattctgtGAACAAATCGACGACTATGAATCGTGTTCTAATGACTGCCATCGAGAGCAAAAACTGTCTAAAAAACTGTTTCTCTTTCAAGATGTGAATGAAGGCAATGCAAATAGCTTGCACCAAAGTAACCCATGTTCAAACGGCGAAGAATCAGTAAATGATAAGCAAGATCTACAATCAATTCATAGTCTTATTTTGCAAGATATAGATGAAGGAACCGAAGACTACATCGAAGATACCAGCACAGAAGTTCCTTCTAGCCTTGTGCAAGGCAAATCCAAAAAAGCAAGGCTCTCCGAAGATTTTGATCGTTTGATTTCATCAAACATCGAGTTAGCATGCAACGAATGTAGCAAGCCAATGAATAGCTTCAAGAACCTTAAGAAGCATTTCAAGAAAGATCACGGGAAACTAGGCTACATGATTTGCTGTAAGAGAAAATTCTTTCGAGCTGCTGACCTCGCTGATCACATCAATATCCATTTAAATCCAGAGTTCTTCAAGTGTTCGCAATGTGGCAAATGCTTCTCCAGTCGTTACAGCTTGGATTTTCATTTGAAGACGTTCCATGCAAATAAAGCCAGTGAAAAGCAGTCTTTCAAATGCAAGCACTGTtcgttaatatttttgaaaaagacCCTACTGGACAGACATCGAAAGCAGTGTGAAACTGAATTGGATGCAAAAAAGCATTTATGCCTGGAATGTGGAAAGAGTTATCCAAGTGAGTCAAAACTTAAAGCTCATCACTTTAACGTACACACAATGGTATACAGCCGAATGTGTCACCTATGCGGCAAGGTTGTTCGGGGTAATAAAGCACTTGAGCAACATCAACTACAGCACGCCGGCATCAAACCGCAAGTACAATGTGAAATATGTGGTGCTAAACTATCAACAAAAGGAATATTAAAAGCGCACATGATAGCTTTACATCCACAGGACTCGAGTGAAACCCATGTTTGCAACGTATGTGGTAAGAAAGCGCCCAGCAAGAGAGCCCTGAAGTACCACATGGATTACGTTCATATGTGCGAAAGGTCGCACAAATGCAACCTATGCGATAAGTCATTTAAACGCTTTCAGGCCCTGAAAGAACACATGACAACACATACGGGAGATCGCCTTTACGAGTGCCCTCATTGTCCAAAAACATTTAAGGTATGTTCGAATATGCATCATCATCGAAAGTTAAAGCACCCAAAAGAGTTTgaagaaaatcgaaaaaatcgCACACAAAGGAAGAAGATGTCAGCAAATTGA
- Protein Sequence
- MLCRLCVNECNDFVNIFDGDGLKNDVINLIATYFTFQVTQNDEHSTIICRHCLDNLCNFYSFCSDVEIAQEKWQVILDLAEADNKKQFCEQIDDYESCSNDCHREQKLSKKLFLFQDVNEGNANSLHQSNPCSNGEESVNDKQDLQSIHSLILQDIDEGTEDYIEDTSTEVPSSLVQGKSKKARLSEDFDRLISSNIELACNECSKPMNSFKNLKKHFKKDHGKLGYMICCKRKFFRAADLADHINIHLNPEFFKCSQCGKCFSSRYSLDFHLKTFHANKASEKQSFKCKHCSLIFLKKTLLDRHRKQCETELDAKKHLCLECGKSYPSESKLKAHHFNVHTMVYSRMCHLCGKVVRGNKALEQHQLQHAGIKPQVQCEICGAKLSTKGILKAHMIALHPQDSSETHVCNVCGKKAPSKRALKYHMDYVHMCERSHKCNLCDKSFKRFQALKEHMTTHTGDRLYECPHCPKTFKVCSNMHHHRKLKHPKEFEENRKNRTQRKKMSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -