Fcup010462.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754959.1:24643019-24648622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.79 1.2e+02 4.3 3.4 1 23 1248 1271 1248 1271 0.95 2 12 8.7e-05 0.013 16.7 5.0 2 23 1438 1459 1438 1459 0.97 3 12 0.00012 0.018 16.3 0.2 3 23 1467 1487 1465 1487 0.98 4 12 2.5e-07 3.7e-05 24.8 3.6 2 23 1494 1515 1493 1515 0.97 5 12 2.4 3.7e+02 2.7 0.1 5 23 1528 1546 1526 1546 0.96 6 12 0.0071 1.1 10.7 3.4 3 23 1553 1574 1551 1574 0.95 7 12 0.13 19 6.8 0.1 2 23 1585 1605 1584 1605 0.96 8 12 0.00018 0.027 15.8 0.8 1 19 1611 1629 1611 1630 0.96 9 12 4.1e-05 0.0062 17.8 0.7 1 23 1641 1663 1641 1663 0.99 10 12 0.0002 0.03 15.6 9.0 1 23 1669 1691 1669 1692 0.96 11 12 0.001 0.16 13.3 4.7 1 23 1697 1719 1697 1719 0.98 12 12 0.0013 0.2 13.0 6.0 1 23 1725 1747 1725 1748 0.96
Sequence Information
- Coding Sequence
- ATGGGTGGCAACGTACAGTGTCCCGTGTGTACATTATTCCTCCTGCCTGGTATGGATTTGTCCGATCATCTGGAGACACATCCAAAAGAGCAGGTCATAAAAGCACTCGTACAAATGAGCCTCAAATTCGAGGTTACGGAAACAGTTACGCCCGATAATCCTAAGAATACCAATGCGACAACACCTTTCACCGAGACTGATATCAATCAACCGGCACCAGAAGATGGAAAAACAACTCCCACGTCAGAGACCTGTGAGAGTACGGCGAGAGGAATTGAAAAGCAAAGGGAAATGGACGAGCATACTGCCCTTACTCAGCTATCTCCTGCAAATAATTCAGGCAATAGACCATGTGGGTATCTGTTCGAGAACAACAgcaatagcagcagcagcagcagcagtagtagtagtaataatTTCTTTGGACCACCGACTCCATATTATCAACATAATCATCAGTCCCATAGccaacatcatcatcaacagcaacagcaacaacagccgCAACATAATCATTTACAAAATTATCATCCCTATCATGGACATCCAGGGCCTTCGCAGCAGCCATTGCGACTCTTCTCCTATCAACCAACAAACAAGCCGTTACAACCACCACCCGCCTATGGCGCAGCCATTAGTCAACTTCGATCTCAAAATAGCCAAAACCTCATGGTAAACAATGTTAATCGTCCGCAATATATGACGGCAAATTACACATCTTCAACGTTGACTGGGGCGTCTTCGAGCCTACCGCCTCCTCTACCACCGCCACCTCTAAGTCAGCGCTATCAGTCAAACTTGGAGCCGTTGGAAACTCCTTCCTTCGCCGATACCTGTCACAGTAACGCAATGTCTCCGCGTCGATCATCGCTTACACCTCCAATAAGACCTCCGCCGCAGTTGTATCGATCACCATTGTCATCTGCCGGACAGAATTCCAGACAGTCGAACTCTCCCTATTCTGTGATGACCGGTTCACCTTCTGTGCTGAGGTTTGCTGAATCACCGGTGACCGCTCACTACTTGGAACGAGAAAACGGTGACTTTATTGTCCAAGAAACGCCCAAGCACGTGGTTGAGTGTGTGGAAAAGGATGACGGAGAGTTTTCCGTGATAGAGCGAGTGTATCACATGCCACCGAGTGTTGTTCAAATTAACGAGGATCTAGACGACGAATTGTCGTCCGATCATGGATCAAATTGTGAAGACATAAAAATGCTGGATGAGGATCTACCGAGTGGAACATGGTCCGGTCGACGGTCGCCAGAACAAGGGCCAATAACGGAGAAGGAACAGCAGAAAAAATCCGGTATCACTGTTCTGAGTGATGTACAATTAGACTTAAACGAATACCTAGACTTAATGGGAAACATAATAGCTTCTAGCAAGGTGGCAAAAAATCGTACTGACATGATAAAGATTGAAAAATTCGAACCCGAGGAGGTGAAGGAAGAAATTGCCAGCAATTGTCTTGAAGGTGACGAGTACGAAAACATGGATGATGATGCTTTCCTGGAAACTGAAAAGAAAGAAGATGCGATTGATGAATCGTCCACATGTATCATCCCAGTAGCTATTGCAGCAGCGTGTTCTACTGCCTCGGTTGTGTCGCCTTCGTCGATGGTCGTTGAAAAGAAGCAAGAGGCGACAGATGAATCCTCATCACGCATCATCCCAAAAGATATAACAACGGCATGCACTTCTGCCTCGTTGATCTCGGTATTGTCGATGGACGAAAAGAAACCGGAGGCGACTGTTGAATCGTCATCATGTATTAACCCAGTAGATATAGCTGCAGTGTGTGCTTCTGGCAAGTCGACGTCGTCATTACCGctgaacaaaaagaaagaagagCCTACCGATGAATCTTCATCATACATTATCCCAGCAGGAATAACAGTAGAGCGTACTTCTGCCTCGGTAACACCGGCTTCATCGGTGACAAGTGTTATACGATTGGCGACAAATCCCAATGCTAGAAGTAATACTCCCTGGACTCCTTCCTTGTCGGCGGAAGAAGCCAGAACAGAGACTAAGCTAGAAGAAACTGGTTCCTCAACAAGCTTTGGTATGGAAGTAACCAAGTTCGAGGAACCTTCAACATCCATTCTTGCTACTGAAGAAACAATGAAGGAGGCAAGCTTCAACTCAAATACTGAAAAGGTAGAAAGCACTGATTCGACTATAGCCAAAGTTGAGGCGGCGGTCAAGGCGGTAAGCCTAACAGATGCACAACCTCAAccccaaataaataataatatcccCGAAAAGCAGGATAATTTCGACATGCAAGTGAAAAAAGAGGAAAGACCTCCAGCTCCTGCGTATCATCTTTCAGTCAGGCGTCCCATAAAGAAGACCCCAAAGAAGCTTGTTATTAAGCCAAGAAGCAAGGAGCCAATAGCATCAACATCTATTCAAATACAAAAGCCATCAACCTCAACGGAAATACCCCCATTGGAGCCACCGCAAAAAGAAGAAGTGCTTTCCGAAGCGACCAAGGCAAAATCTCAGGAAAACGAACTAAAAAGCATTAAGACAGAACGTCTACCAACCACTTCTTCAGACTCTATGCCACCGCCTCTGTTTGCTGACGCCGATGAGAAACTTCCACCCGACGATGACTTGCAACCGTCTACATCGTATGCAATTGTCAATTCTCCTGTATTGGCAAGTACAAGCTCAGATGACAAACCCACCGCCGACTTGTCAGCATTCCTCGACCAGTGcatgaaaaaagaagaagaggcaGATGATCATCCCATTCACTCTCTTTTTGTCATAGAGAGCGTACCTGAACCACTGAACGATGCATCAAACCAGGTACCTGCGTTTCCATCGGCTTCCCTCTTCTCGAAGCCATTAACGAAAACCACCAATGGTGAACAGCTCTCCATTTCCGAATCTATTCTTCCCGACAAAAGTAACAAGGAACACGATCCATCACCATCACTACAGCCAGCGTTTCCTTCGGCTTCTCTGTTCTCAAAGCCATTGTCGAAGAGCACAGAACAACTGATCATATCCGAAACTATCCTTCCCGACAGCAGTGATATACAAGAACCGGAGGATccatcaccaccaccagcaccagcaccaccactacaacaaccacaacatcagcagcaacaaAACAACTCAACATATGTTGAATATCCATTTAGCTTCCTCTATGGGACCAACCATGAAGAGGAGATCAAGCATAACATTTCGCCGCCGATATACTGCACCGAGGACTTCAACAAGTACAGTGCAAGCACAAGTGGAGGAAATAGCGCGAGCTGCACCTGGTATCAATCACAAAGCAGTGAAAATGATTTCGAAATGGGCGGCAAGGGAAGCTACCTCGACTTGGATTCGTGTAAGCGAAGTACCTCATTTGCGGCAGCAACTGAGGGCAGTATGCCGACGACAGACACCCTTAACATAAGAACAGATGAAAAGATGCCAGCGAAGGGGGAGATCTCGGAACAGGAGAGCAATTGCGGTGTCGAGAACTCATGGAGCCAGTCGCTTTACAACGAGTTTCCAGTGCGTTTCCCGAATACTTATCAAAATTTCATGGCGGTTCAAGAGACCTGGAGCCACGATAACTATTTTCGTCCTCAGGACCTAACCTCACCTGTCGAGACTAAAAACTTTAGCTTGCGGTTAACCGAGGAATCGCCTATCATGGACACTTTGCCATCGACTTCAAAACGAAAGGCAAAAACCGTCGCCAAGTTGCCACGTAAAAAAACCTTTCAATGTGCGCATTGCAAAACTCATTTTCCCTTACTCAAGGAGAAGAACGCGCACTTGATCAAACAGCACGGCTACAAGCGCGTCAATCGTCGACTCATACGTGACCCACCGACTTCGACAGTTACCACTGCAACAATGAACACAGACGCTGGTGCCTCCTTGCTACTTGGTCTGGAACCGAGTGCACTACCCCCAGCGCTAGGAGAAGAGGAAGACTCCAAGGCATCAATTGTGAAAATCGAACAGGACAGCAAAGCTGCTGCTCTTTGCGAGGATCGCAGAAGTGAGTGCAAGGAAACTATTCCCAATCTTTCTCTAACAAGGACAGTGCAAACGGCCACAAATGCAAACGTATCTCGCACCAAGTATGACTCAATGCGAGCACGAGACAATCGAATGCtgatcaatttcaatttgaacgCTCTCAGCATCAAGAACGAAGGAAAAGCCGAAGTCGAAACGCACAGTTTCTATAAGGAGTCAAAGTCAGCGTTCTTCTGCTTTGTATGCCAGCGGGACTTTCTCACAAACAAGCTGTTCGATGAGCATTTGGTTGAGCACCCAGCCGAGTGCTTTACGTGCCACAAGACATTCACGCGATGGAAAAACTTCATGGTACATCTGAAGCGGCATCTCGGCTGGAAAGATTTTGGCTGCACCATCTGCGAAAAGAAGTTTGTAATAAGAAGCGCCCTCGTCGAACACATGCGAATGCACACTGGCCAAACCCCCTTAAAGTGTAAGGTGTGTGGCAAGAGCTTCAAACGATACTCAAATCTAACGCAGCATCGCAAGCGTCACGGAAACAGAATCAATCGCAACAAAGAGTACGTTTGCTATTGCGGCGAAGTGCTACCGTCAAAAGCACGCTTTATCTGGCATAAAGAGACACATGATTTGAAGCCGAAGTGCTGCCCGTACTGTCGGGATCGTTTCGTGCACGCAAACAGCCTGCGCCGTCACATACGACTGGCGCACTCCGACAAATTCGACTACACCGAGCCGATGGAGTGTCCGATGTGCAAGCAAATTTACGCCAAATCCAGCATAAAAGCGCACATGGCGACGCATTCTATGGACACACAACACGAGTGCTTGATCTGCAGTAAATCGTTCAGCACCAAGTGGAATTTGAAAATCCACAATTGGGTGCACGCCAATCGCACCATGAAGCCCTTCAAGTGTAATCAATGCGTGAAAGCGTTTGTGCGCGAGGTCGACTACAACAACCACATGAACTCGCATAAGCAAATCAAGCCGTACACATGCGAGCACTGTGGCTGCAAGTTCATACGCAAATACAATTACATCCGGCATCGGCGTGAGCATCACGGCAACAAAAAATTCACCTGCGATCTCTGCGGCAAACTCTTCCACCGGCACTATTATCTGATCGAACATCGGCGCATACACACCGGTGAGCGACCGTTCCAGTGCACGATATGCGGCAAGAGCTCCACCACAAAGACGAACCACAATAAACATCTGAAGATTCATCATTCGCGGGATCCGTTCACATCGGAGGCGTAA
- Protein Sequence
- MGGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQMSLKFEVTETVTPDNPKNTNATTPFTETDINQPAPEDGKTTPTSETCESTARGIEKQREMDEHTALTQLSPANNSGNRPCGYLFENNSNSSSSSSSSSSNNFFGPPTPYYQHNHQSHSQHHHQQQQQQQPQHNHLQNYHPYHGHPGPSQQPLRLFSYQPTNKPLQPPPAYGAAISQLRSQNSQNLMVNNVNRPQYMTANYTSSTLTGASSSLPPPLPPPPLSQRYQSNLEPLETPSFADTCHSNAMSPRRSSLTPPIRPPPQLYRSPLSSAGQNSRQSNSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDLDDELSSDHGSNCEDIKMLDEDLPSGTWSGRRSPEQGPITEKEQQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKNRTDMIKIEKFEPEEVKEEIASNCLEGDEYENMDDDAFLETEKKEDAIDESSTCIIPVAIAAACSTASVVSPSSMVVEKKQEATDESSSRIIPKDITTACTSASLISVLSMDEKKPEATVESSSCINPVDIAAVCASGKSTSSLPLNKKKEEPTDESSSYIIPAGITVERTSASVTPASSVTSVIRLATNPNARSNTPWTPSLSAEEARTETKLEETGSSTSFGMEVTKFEEPSTSILATEETMKEASFNSNTEKVESTDSTIAKVEAAVKAVSLTDAQPQPQINNNIPEKQDNFDMQVKKEERPPAPAYHLSVRRPIKKTPKKLVIKPRSKEPIASTSIQIQKPSTSTEIPPLEPPQKEEVLSEATKAKSQENELKSIKTERLPTTSSDSMPPPLFADADEKLPPDDDLQPSTSYAIVNSPVLASTSSDDKPTADLSAFLDQCMKKEEEADDHPIHSLFVIESVPEPLNDASNQVPAFPSASLFSKPLTKTTNGEQLSISESILPDKSNKEHDPSPSLQPAFPSASLFSKPLSKSTEQLIISETILPDSSDIQEPEDPSPPPAPAPPLQQPQHQQQQNNSTYVEYPFSFLYGTNHEEEIKHNISPPIYCTEDFNKYSASTSGGNSASCTWYQSQSSENDFEMGGKGSYLDLDSCKRSTSFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQSLYNEFPVRFPNTYQNFMAVQETWSHDNYFRPQDLTSPVETKNFSLRLTEESPIMDTLPSTSKRKAKTVAKLPRKKTFQCAHCKTHFPLLKEKNAHLIKQHGYKRVNRRLIRDPPTSTVTTATMNTDAGASLLLGLEPSALPPALGEEEDSKASIVKIEQDSKAAALCEDRRSECKETIPNLSLTRTVQTATNANVSRTKYDSMRARDNRMLINFNLNALSIKNEGKAEVETHSFYKESKSAFFCFVCQRDFLTNKLFDEHLVEHPAECFTCHKTFTRWKNFMVHLKRHLGWKDFGCTICEKKFVIRSALVEHMRMHTGQTPLKCKVCGKSFKRYSNLTQHRKRHGNRINRNKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICSKSFSTKWNLKIHNWVHANRTMKPFKCNQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -