Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: -
Assembly: GCA_963576555.1
Location: OY754958.1:159354313-159356429[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00068 0.1 13.9 1.8 1 23 243 265 243 265 0.95

2 11 0.046 7 8.2 0.2 5 23 284 302 282 302 0.95

3 11 0.0081 1.2 10.5 2.5 1 20 308 327 308 331 0.94

4 11 0.013 2 9.9 4.6 2 23 346 366 346 366 0.96

5 11 0.0013 0.2 13.0 0.2 1 20 372 391 372 394 0.90

6 11 0.011 1.7 10.1 2.2 1 23 399 422 399 422 0.96

7 11 1e-06 0.00015 22.8 1.3 1 23 429 451 429 451 0.99

8 11 0.00024 0.036 15.4 0.9 1 23 457 479 457 479 0.98

9 11 5.3e-08 8e-06 26.9 2.4 1 23 485 508 485 508 0.98

10 11 0.00044 0.067 14.5 2.2 1 23 513 535 513 535 0.97

11 11 1.4 2.1e+02 3.5 0.1 1 23 540 563 540 563 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00068	0.1	13.9	1.8	1	23	243	265	243	265	0.95
2	11	0.046	7	8.2	0.2	5	23	284	302	282	302	0.95
3	11	0.0081	1.2	10.5	2.5	1	20	308	327	308	331	0.94
4	11	0.013	2	9.9	4.6	2	23	346	366	346	366	0.96
5	11	0.0013	0.2	13.0	0.2	1	20	372	391	372	394	0.90
6	11	0.011	1.7	10.1	2.2	1	23	399	422	399	422	0.96
7	11	1e-06	0.00015	22.8	1.3	1	23	429	451	429	451	0.99
8	11	0.00024	0.036	15.4	0.9	1	23	457	479	457	479	0.98
9	11	5.3e-08	8e-06	26.9	2.4	1	23	485	508	485	508	0.98
10	11	0.00044	0.067	14.5	2.2	1	23	513	535	513	535	0.97
11	11	1.4	2.1e+02	3.5	0.1	1	23	540	563	540	563	0.88

Sequence Information

Coding Sequence: ATGGAGACCACAGATATACGTAATGTGGTCATGAAACTTAAATCCTCACTACCAATTTGTAGAATATGTCTAGATATCTCGATGGAATACATTGAGTTTGAAGGACCTTTGTGTTCCGTGAATGGGGAAGAAATAACATATTCTGATGGATTCAATGAGATTACTTCGCCTGGGATTGATTTGCCGGATGAGTTACCAACGAATTTCTGCGTAGATTGTGGAAGTGATCTGCTAAATGCTTATCTGTTTCTAAAACGGGTAGAAAATGCAAACCAAATACTGGCCATGGTGAAATGTTTCACCGAAGAGAGTACAACATCGGAGAACCGCCACGCGGAGGACTATTATTCGGACGAACAGCCTAGTAGTCCTGTGGAAAACCTTACAGTTGATATTCTTTCCATCCTGCCTGATGATCAGCAGACTTTGCATGTTACTAACGTAAACGACAATGTCAAAAGTTTGctTATTGAAGACgatattgcaataaaaattgaagaagatcCAGACAAATTGAACAGTAAATTCAAAAATGAGGAAGATGATTTGCGAGAAGAGAATGCAtcACCGATGTTTGATTCTCGCGATGAATATCACACGGAAAATAGCAACTCTGCTGTAGATGAAGAGGCACAGGATATGTGCAATGACCATGGCGAGTTTTGCGAGACAATGGACGTTCTAATCGATGAACGTAAAAAACACAATTCACAGGAGAGCTCCATGTATGTATGCTTTCACTGCAAGAAGGTGTTTTCGGAAAATCAAGCGTTGGACAATCATGTGTTGTTTCATAAGTACTCCAAATCGGCGTTAGACTACGCAGATAAGATTGTTTTTGGTTGCATTATATGTGAAAAGATATGCCGGACTGAGGGTGAATTTATTGATCACATAAATGTCCACACAGGCAAAAAGCCATACGAGTGTAATAATTGTTCAAACCGGTTTCACACAAAACGAAACCTCCAGCTGCACACATGGCGCGTGCACAAAAATCGTGATTTGAAAAGGAGAAAAACTAAAGAATGTGAAAAGTGTCCTCATTGTCATCGAGTAGTTCGGAAGGCTCATATGGAAAAGCACATGGAAGCACATAACCCATCAAAGGACTTCGCCTGTTCTGTTTGTGaaaagaaatttgcaacaaaactAGGACTGAAAGCTCATTCCGTCGCTCATAAACAGCGCAAATTTGTGTGCAATTCCTGCGATAAAGTCTGCTTAACAGAGTTCACGTTACGAAAGCACATCCAATATATTCATCTTTCCGATCGTAAAAAATACCAATGCGAAGACTGTGGGCTGTTTTTCCAATATCCTTCATATCTCAAGGATCACCAGAGAAAGCACAATTTGCAGAACCGATTTCAGTGCTTGTATTGCGACCGATCTTATTGGCGTAAGCCTCAGTTAGATGTTCATATGCGGTATCACACCAATGACTTTCGATACAAGTGCGAGCAATGTGATAAGTGCTACGTTACCAAAAGCAATTTAACGGACCATATAAGATCGGCGCATACCAAAATCACATACGACTGCGATAAGTGCGATCAAAAGTTTAAGTCCGGAACGGGTCTACGAAAGCATAAGTATACACACACTGGCTATCCATATATATGTCCACTTTGCAGCGTAGGTCAAACGTCGCGATCGGGaatgaagGCACATTTGTTTGGTgttcacaaaaatgctgttaCCGAGGATGAATTTAATGAGATGTTTCCTATAATAATTCCTAAGACGGGCTACCGAAGGCCAAAAGTTTGTtga
Protein Sequence: METTDIRNVVMKLKSSLPICRICLDISMEYIEFEGPLCSVNGEEITYSDGFNEITSPGIDLPDELPTNFCVDCGSDLLNAYLFLKRVENANQILAMVKCFTEESTTSENRHAEDYYSDEQPSSPVENLTVDILSILPDDQQTLHVTNVNDNVKSLLIEDDIAIKIEEDPDKLNSKFKNEEDDLREENASPMFDSRDEYHTENSNSAVDEEAQDMCNDHGEFCETMDVLIDERKKHNSQESSMYVCFHCKKVFSENQALDNHVLFHKYSKSALDYADKIVFGCIICEKICRTEGEFIDHINVHTGKKPYECNNCSNRFHTKRNLQLHTWRVHKNRDLKRRKTKECEKCPHCHRVVRKAHMEKHMEAHNPSKDFACSVCEKKFATKLGLKAHSVAHKQRKFVCNSCDKVCLTEFTLRKHIQYIHLSDRKKYQCEDCGLFFQYPSYLKDHQRKHNLQNRFQCLYCDRSYWRKPQLDVHMRYHTNDFRYKCEQCDKCYVTKSNLTDHIRSAHTKITYDCDKCDQKFKSGTGLRKHKYTHTGYPYICPLCSVGQTSRSGMKAHLFGVHKNAVTEDEFNEMFPIIIPKTGYRRPKVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -