Fcup022839.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:30703847-30707386[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.058 8.8 7.9 5.1 2 19 268 285 267 287 0.93 2 18 2.6 3.9e+02 2.7 1.4 3 23 300 320 298 320 0.87 3 18 0.004 0.61 11.5 0.1 3 23 329 350 328 350 0.95 4 18 0.0013 0.19 13.1 0.6 2 23 357 378 356 378 0.97 5 18 0.006 0.91 10.9 3.4 1 23 384 407 384 407 0.98 6 18 0.033 5 8.6 2.5 1 23 413 436 413 436 0.97 7 18 8.9 1.3e+03 1.0 0.0 1 19 445 463 445 465 0.73 8 18 0.042 6.4 8.3 0.1 3 23 485 505 483 505 0.96 9 18 0.0021 0.32 12.4 0.6 1 23 510 532 510 532 0.98 10 18 0.23 35 6.0 0.2 1 23 548 572 548 572 0.93 11 18 0.019 3 9.3 5.5 1 23 578 600 578 600 0.99 12 18 0.0041 0.62 11.5 0.9 1 23 606 629 606 629 0.97 13 18 0.0097 1.5 10.3 1.0 2 23 635 656 634 657 0.94 14 18 0.00011 0.016 16.4 0.7 2 23 661 683 660 683 0.95 15 18 2.3e-05 0.0034 18.6 0.3 1 23 689 712 689 712 0.94 16 18 0.0025 0.38 12.1 3.2 1 23 718 740 718 740 0.98 17 18 0.00055 0.084 14.2 5.2 1 23 746 768 746 768 0.98 18 18 9.1e-05 0.014 16.7 0.1 1 23 774 799 774 799 0.96
Sequence Information
- Coding Sequence
- atgtctGTAGAGTGTTTACGATGCAGAGTCATATTGGTCGAAGATTACCAATTGATATTCGATGAAACTGGCATTGAACTTCAGCTGAACAAACTACTAGCGGAGCACTTTGGAATCAAAATCGAGGAGGATTCCACTACAAGTCAGGCACTTTGTGAGGAGTGTGTTACCAAGTTAATAGAACTTTACGATCTAACTCAGCGAGAAGTGGAGCTACAATCGAATGCGATCGaaacaaATAAACTGGACACACAGGAATTTCAACAAGAATtagttaaagaagaagaagaatttaaagaaGATGATTTTGAGAATGATGATGGTGATTCAAATGAAGAAGAAGACATAATAAAAGAAGACAACGATaatagttttgaaatttttaaaatcaatgacGGCGAAATTGAGAGTAACGATTTTGAATATGAGGAAGTTGATTTTAAGTCCCTCGTGCCAGTTCAAAATGGTGAAGAACTCCTAGGTTTTAGCGCCGAAGATTCGGCTGCTGTTGAATGTCTAGATGGACTGGAAGGCGGAATTACGCCGTCAGATTATGTGCGTAAAGCCATAAAAAGTGATTTGGAAATTATTGAATGCAATCAAACTACTGTGTGCATGTTGTGTCAGGAAGTTATGAAGAGTCACACGGCAGTTATAATGCATATTTTGGCAAATCACGAAGCGGAGGACAAGACTTACTCATGTATTTTCTGCAGCGCAGATGGATTTCATTCAACCAATGATCTGTCACACCACATTGTCCTGAGGCATTACGATATAGAAACTATCACAATTTATTGCACTTGTCCTGAATGTAAGAAGAGATTCGCAAATTTTATGGATTACAATAAACATTCGTGCTTTAAGGACAACGCAGGAAGTCGCTTGCTGCAGAATTGCGCTGTATGCTCGAAAgagtttatttcaaataaaagGTACCGCTTCCACTTACAATTTCATCTGGAGAAACAAAGGCCAAAAGCATGTTTTATCtgtgatattttcttttcaaatgaaaacGAGTTTTTCGAGCACATTATGTACGCCCATGAGAAGGAAGACAAGTTGGTGTGTAAAAAATGCGATCGAATTAGTACATCGAAGGAATTGTACGATAGTCATATGAAAATTCACGACGCTGTTCGTTCGTTCCAATGTCAATACTGTTCAAGAACATATTTATACAAGCAGATGCTGACGAATCACATTaaaCGGCAACATACTGACAAAGATTGCTATCAATGCAAAGTGTGCATGAAGACTCTAGCGAGCAAGCACATCCTGACACGTCACATGCAGTTAAAACACTCTGCAGAAACCGAAGAAAGTGTATACATCTGCTCATTATGTGGACTTGTTGAGGTCAAGAAAGATGCTATACAGGAACACATAGAAGAATATTGTTGTTCAGATGCAAAAATGGACACGAAGCACTTGCAAATTGCACTCGCATGTGAATTTTGCGAGAATGCCTACGAATCTGTGGAGAACTTAAATGAGCATCGCAAAATTCATGTGAAAAACTGTTACATTTGTTGGATATGCAAAAGCGAATATTctgaattcaaaaatttaaaaactcacATTCTTACGCACACTACCGTTCCaccaattcaaaaaacattccCAGTTAATAGGCACTACGTGTGCGATTATGATGCATGCAACCAAACATATCTAACATGGCCATCGTTGCGGGCTCACAAACAACGCCATGCTTCCCACTCAAAGTTCACGTGTGACATTTGCTGTCAAGTATTTAGGaaccaaacaattttaaaccaTCACCAACGTACCCATTGTCAAAACGAAAAGTACACCTGCcaattttgcgcaaagatgTGTCCTAATCAAATGTCATTGGCCGTTCATATTGCACGAAAACACAACAACAATAGCATATCATGCAGCATCTGTCACTCGACCTATGCAACGGAAGAAGCGCTTCAGGAACACGTCGATAAGCACCATGTCGAATTGACATGCCAATTGTGCGGCAAAGTTACAAAAAACAAGCGAAATTTTGAAACACACGTAAGTATGGTGCATGCCAAGGTAAAACGGTTCTTCTGTCCGACATGCGACAAGGGATATTACAATAATAGTGACCTTAAAGTCCACGTGAAAGCGGTACACTCGGAACtgaataaatacaaatgtaAGCACTGTGAGTTTACCTCAAGCTACGAATCGTCATTTAATGCACATCTGCTGCTACATGAAACGAAAAAGCCATTCAAATGTGAGGAATGCTCGAAGGAGTTCACACGAAAGATGTGCTACAAGCTGCACTTGTTGCGGCATTCCGATGTTAGGCCATTCAGTTGTCCAATTGAAGATTGTGGCAGAAGCTTTGTTACGAGGGGTATTCTTAATTCACACATGCGTGATAATCATTCAGGACctaaaggaaaaattaaaaaggcttTGCCGCGagccacaaaaagaaaaaataaaaattcaactcaACTGGTGTATAATTCAAAACAGGTTAAATATGAGCTTGCTGCAGACATACAGGACACTGACACCGTAGACAGCATCCCAGTGGAATTGGcccaagaagaagaagacatgATTTTTTACGTCGGTGGGGATAATGATATAATTGAAGATTTATATAACTGA
- Protein Sequence
- MSVECLRCRVILVEDYQLIFDETGIELQLNKLLAEHFGIKIEEDSTTSQALCEECVTKLIELYDLTQREVELQSNAIETNKLDTQEFQQELVKEEEEFKEDDFENDDGDSNEEEDIIKEDNDNSFEIFKINDGEIESNDFEYEEVDFKSLVPVQNGEELLGFSAEDSAAVECLDGLEGGITPSDYVRKAIKSDLEIIECNQTTVCMLCQEVMKSHTAVIMHILANHEAEDKTYSCIFCSADGFHSTNDLSHHIVLRHYDIETITIYCTCPECKKRFANFMDYNKHSCFKDNAGSRLLQNCAVCSKEFISNKRYRFHLQFHLEKQRPKACFICDIFFSNENEFFEHIMYAHEKEDKLVCKKCDRISTSKELYDSHMKIHDAVRSFQCQYCSRTYLYKQMLTNHIKRQHTDKDCYQCKVCMKTLASKHILTRHMQLKHSAETEESVYICSLCGLVEVKKDAIQEHIEEYCCSDAKMDTKHLQIALACEFCENAYESVENLNEHRKIHVKNCYICWICKSEYSEFKNLKTHILTHTTVPPIQKTFPVNRHYVCDYDACNQTYLTWPSLRAHKQRHASHSKFTCDICCQVFRNQTILNHHQRTHCQNEKYTCQFCAKMCPNQMSLAVHIARKHNNNSISCSICHSTYATEEALQEHVDKHHVELTCQLCGKVTKNKRNFETHVSMVHAKVKRFFCPTCDKGYYNNSDLKVHVKAVHSELNKYKCKHCEFTSSYESSFNAHLLLHETKKPFKCEECSKEFTRKMCYKLHLLRHSDVRPFSCPIEDCGRSFVTRGILNSHMRDNHSGPKGKIKKALPRATKRKNKNSTQLVYNSKQVKYELAADIQDTDTVDSIPVELAQEEEDMIFYVGGDNDIIEDLYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -