Fcup025781.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:83310451-83316144[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 5.5e+02 2.2 0.9 1 19 82 100 82 103 0.92 2 13 0.24 36 5.9 1.1 2 21 114 133 113 134 0.91 3 13 0.067 10 7.6 0.6 2 19 137 154 136 155 0.96 4 13 0.044 6.7 8.2 0.1 2 23 164 185 163 185 0.97 5 13 8.9e-05 0.013 16.7 0.6 1 23 206 228 206 228 0.99 6 13 6.6e-05 0.01 17.1 0.3 3 21 234 252 232 253 0.93 7 13 0.0012 0.19 13.1 2.0 2 23 735 756 734 756 0.96 8 13 0.073 11 7.5 0.3 2 23 784 806 784 806 0.94 9 13 9.2e-05 0.014 16.7 0.6 1 21 817 837 817 838 0.95 10 13 4.8e-05 0.0073 17.5 0.5 3 23 848 868 846 868 0.96 11 13 1.9e-06 0.00029 22.0 3.1 1 23 874 896 874 896 0.98 12 13 5.4e-05 0.0081 17.4 2.1 1 23 902 924 902 924 0.98 13 13 0.0085 1.3 10.5 0.1 1 20 930 949 930 951 0.95
Sequence Information
- Coding Sequence
- ATGACGGAAAtattcaatgaaattaaaatcgaaCCCATGGATATGGAATTTCCAGtaattaaagaagaagaactcgatataaaaaCTGAAATAGAAGATAACTCACACACCCAAGTGCCACAGCATGAACTCCCCGACGGATTCTGTACATTCATCATCAAAGAAGAGCTAATGCATGAAGACGAACTAAACATCACAGAGGACACCCAGCAATCACTCATACCTATCACTGAATCGACACAATTCGAATGTTACGCCTGCCAAAGTTACTTCTCCAGCGAAGACTTACTGCTCAATCATAACTGCATTGAAAGCCTACACGAGACATCCAATCACTGGCAATGCACAGATTGCCTGCAAAAATTCGTGAACCAAAATGACATCGCCACACACAAGTGCAAGGCAAAGCAATGCAAAAATTGCGAAGAATATTTCGAAACAACTGTTCAGCTGAAAAATCACGAACCCTCCAAATGTAAATTCTTCAAAAAGTGTTCGGTATGCGCACAAGTGTTTGTTACGCCGCTTGTCTACCAGGAGCACATTCAGTCCCACATAAACAGGCGAAAACCTCTTCATGGAAAATTCACCCCAAAGCAACCCCAACAGAATTTATTTACCTGCAATATTTGTGATCTAGAATTCATGGTCAATACTGATTTGGTGAAACATTACAAGACGCATGGGCCTGAAATTATCTGCGAAGACTGTGGCCGGCACTTTAAAACAAAAGGTGGTTTGCAACAGCATAAGAAGGGGAAgaagtgtaaaaataaaaattcgagtAATGTTACAAGTAGCCGCAGCACTAAGAACGGCGTTGACGTTTTGGACAAAGtggaaaatgtaaatgaaaacgGAGTTGCctcaaagaagaagaagattgctGAAACAGCCGTAGTTGCTGTACCTGACATCAACGCCGTTAAAGATGTAGACGACCTTCAGCTGCCGCCGAAAGCTGCGGAATCTATCGTACCCGCTCAGCAACCTCAAACTGCCTTACCAGACGTGGATATTCCTAAACCAACTGCAAATAGTAGCCTACAAAGTGTGGTTGGCAACCCTGCGCCGGCTTACCTCGTAGCTGCTATTCCTAAATTGCAACCAACAGTTCGTGTCTCACAGCAGAATAACTTCACATTCTGTGCTCAGGGTGGTAACGACTTGTTACTAAGCACAGAGCTCGATCGCCCACAATCATGCTTCTCCGCTCAAAAAAAGGAAGTAATTTTTGATAGCCAGGGAAATGCCTTCAATATAACGAATAACCTTCCTCAATATCAACCAGTGCACACCCCTCAACGTTTAGACGTCATTGTCGATAGCCTGGGCAATGCTTACACCTTAACAAATAGCCTGCCTCAGTTTCGCGCGCAACCAAGACCTCAACGCCTAGATGTAATTGTCGACGGCGACGGAAACGCATTCGTCATGAAAAGAGAAGATCTCATCACAGGTGATCTGCAGTATCCGAGAGTACAAACGGTTTGCGACCAACAAGTTGTTGTGGATGCCCAAGGAAATAGCTTCACGATAACACAAAATCCCACCGAGGAACTAGGACCAAGAGAAGATATCGAGTCTGTAAACAAGGACCACTGCTATACGAGGAAAAAGTCCATTCTTCTCCATCGAGcagctgaaaagaaaacatcTACCGATTCGATGCCCTATAATGATTTGCTGCTAGAGGAGCTCTTCGACCGCAAAACCAAGTCAATGGCGAAGGGACGAAAAGCTGCCAGCGGATCATCGTCTCCCATAGAAACAGATCAGAAGGATATTCTTCAAACTATTAAAAGCGAGCCAGAAACCAGTACAGATAATTACACGGAAATGGAGACAACAACAAACTCTTGTCCAAATTTGTCCACAGAAgactttgaaaaaatattcgttTCTGATGTTCAGCAAACTATTAAAAGTGAACCAGAAACCATTGAGGGCACTGCGACAACGAACAATTTGTCCAGCGAAGACTTCGAAGAAATGATCACTTCAAATAAACTTCCAAACTCATTCCGCAAATCCGCTATAATTGAGAGTCTCAAAGACCAATACCAAAAGGCGAAACTCAATTCCGACATGTCCTCGGACGAGAGTAGTCAAAACTCGGCTTTGCCGTCAATTTTTTGCAAGGTGTCCGAATATAAAAAAGTCTCTACTCTCGAACCAAACAGTAACTATCGCTATGCATGGATGTGTGACAAGTGTCCGCGCCAGTACGTCCAACGTCATACCTTTGTGAAACACCAACGTGGCCACGGCAAAAAAGAGGAAGAAATCTCTGAAACAGTCTTTGAACTGAGGCCGGAGATAATACCTGTACCTTCCGGGCCTTCAGCTTATTGCACTACGTGCCGTCTAGCTTTCCCCACCGAGCAGTTATATGAGCAGCATTTACAGGAATATCATAAAGAGGACACAAAACCGCGACCTTGTAGGTTCCAGTGTCCAAAGTGCGGCAGGATCTGCTCTACGCGTGCCACTCTGACGGATCATGTCCAGCAAGACTGCGGTAGAAACCCAAACTATGGATGCGAAGTTTGTGGCAAGAACTTTTACTCGCGGAGTACACTGCAATTGCATCGAACCATACACACAGGTGAGCTGCCGCACAAATGTGAGTATTGTGGCAAGCGGGTGCGAACACGAGGCCAACTAACAGTCCACCGACGTACGCATACTGGCGAGAGACCATTCCCCTGCACGGTCTGTGAACGGCGCTTCACCCATCGCGAAACCCTCATCTCGCATCTGTCGCGTCACATCGACATGAAGCGGTACAAATGCGCCGGATGTAGTATGCGCTTTGCGTCCATTTCTGGACTTAAAATGCATCGCGAGAATCGTGTAAACACGTGTGGCAAATTTAAATTCAGCGCTCAGGCTGTGGGCCCACGCGTTCGGGTAATCAGGGGAAACGTTATGTTCGAACCGCAGCCAAAGTTCAATCCCTACTCGCGAAGTAATGAAGATGAAGAGGAGAATACCAAAGAGAATGGTAGCCCCGAAAACTGCGACAATGTGGAGAGCTAA
- Protein Sequence
- MTEIFNEIKIEPMDMEFPVIKEEELDIKTEIEDNSHTQVPQHELPDGFCTFIIKEELMHEDELNITEDTQQSLIPITESTQFECYACQSYFSSEDLLLNHNCIESLHETSNHWQCTDCLQKFVNQNDIATHKCKAKQCKNCEEYFETTVQLKNHEPSKCKFFKKCSVCAQVFVTPLVYQEHIQSHINRRKPLHGKFTPKQPQQNLFTCNICDLEFMVNTDLVKHYKTHGPEIICEDCGRHFKTKGGLQQHKKGKKCKNKNSSNVTSSRSTKNGVDVLDKVENVNENGVASKKKKIAETAVVAVPDINAVKDVDDLQLPPKAAESIVPAQQPQTALPDVDIPKPTANSSLQSVVGNPAPAYLVAAIPKLQPTVRVSQQNNFTFCAQGGNDLLLSTELDRPQSCFSAQKKEVIFDSQGNAFNITNNLPQYQPVHTPQRLDVIVDSLGNAYTLTNSLPQFRAQPRPQRLDVIVDGDGNAFVMKREDLITGDLQYPRVQTVCDQQVVVDAQGNSFTITQNPTEELGPREDIESVNKDHCYTRKKSILLHRAAEKKTSTDSMPYNDLLLEELFDRKTKSMAKGRKAASGSSSPIETDQKDILQTIKSEPETSTDNYTEMETTTNSCPNLSTEDFEKIFVSDVQQTIKSEPETIEGTATTNNLSSEDFEEMITSNKLPNSFRKSAIIESLKDQYQKAKLNSDMSSDESSQNSALPSIFCKVSEYKKVSTLEPNSNYRYAWMCDKCPRQYVQRHTFVKHQRGHGKKEEEISETVFELRPEIIPVPSGPSAYCTTCRLAFPTEQLYEQHLQEYHKEDTKPRPCRFQCPKCGRICSTRATLTDHVQQDCGRNPNYGCEVCGKNFYSRSTLQLHRTIHTGELPHKCEYCGKRVRTRGQLTVHRRTHTGERPFPCTVCERRFTHRETLISHLSRHIDMKRYKCAGCSMRFASISGLKMHRENRVNTCGKFKFSAQAVGPRVRVIRGNVMFEPQPKFNPYSRSNEDEEENTKENGSPENCDNVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -