Fcup008973.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754958.1:168444230-168446036[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2e-05 0.0034 18.6 0.3 2 20 189 207 189 210 0.92 2 12 0.00012 0.018 16.3 0.3 3 23 234 254 233 254 0.97 3 12 6e-06 0.00091 20.4 1.6 1 23 260 282 260 282 0.98 4 12 0.00017 0.026 15.8 0.7 1 23 288 311 288 311 0.97 5 12 3.2e-05 0.0049 18.1 3.0 1 23 326 348 326 348 0.99 6 12 0.0095 1.4 10.3 4.2 2 23 361 383 360 383 0.90 7 12 0.0043 0.66 11.4 1.7 2 23 390 411 389 411 0.96 8 12 0.00062 0.094 14.1 2.3 1 23 417 439 417 439 0.98 9 12 0.0036 0.55 11.6 0.7 1 21 447 467 447 468 0.95 10 12 3.1e-06 0.00047 21.3 0.1 1 23 477 500 477 500 0.96 11 12 0.91 1.4e+02 4.1 0.2 2 22 510 530 510 532 0.87 12 12 0.065 9.9 7.7 2.3 3 23 539 559 538 559 0.95
Sequence Information
- Coding Sequence
- ATGTGTGATAAAGGTGCTTTTGGAACCACAGAAGATTTCTCTGGTGGTGACTCTGACTACCATCACCACCAGGGAGATATTCTgtgtgaatttgaaaattcgTCTGGCTTTATAGATGAAGACTCCAACTTAAATCGTGAGAACATATCTTATATAAGCGGATCTGATGTATTGATCGGTGCCTCGGAGACAATAGAAACAGAAATTTCTCCCGAGCTAGAAATTGATACCACAAATTCCATTGTAATTGCCGACTCGGACCACCTACAAGATGTACCACAGGATACTGCTTTCATCATTTTGTCGAGTATTCCAATGGGAAATACGGAGGACCTAATAGCAGATACTTCACATGAGATTCTATCTAGTCCATTGGATTCTGCTGACGCAGATTTGGATACCTCAATAGCAAATAGTTTAGTTAATGTTCTGTCTGAGCAGTGCGAGGACAATTTTAATATTCCAAAAGATAAAATACCAAAATCGGATACAATTGCAAATGAAAAAGTTCAAAATGAACGGATAAGCAAACGAGTTCGAAATCTAGTGCCTAAAACAAAACCAACGTGTAACATTTGTGCGGTAGTATTTACCACCAAGTCCTCTCTTAAGAGACACATGCCTATTCATTTGGAAGGGAATGAGACTAGCGGCAAACGTGGTCGAAAGCCACATTTTGGTAAATTATCTAAGCCGATGTGCAGCATTTGCTCGGTGGAATTTACTAACACGGCCTCTCTTAAGACCCACATGCTGATACATTCTGGAGAGCGTCCATTTCAGTGTGATTTATGTGAGAAAACCTTTACCAGGAATACGGTTCTACGGATTCATCGGCGTCTACATACTGGAGAGAAGCCCTATAAATGTGAATTGTGTCACAACGATTTTGTTACCAAAGAGGCTTTAGCGCGTCATGCAATGAAGGATCACCCAGTTGAGACGAATGTTAATGCACAGAAAGAAAAACCTTCTTACAAGTGTGAAGTTTGTCTGAAAACTCTCTGTTCCAAGTATTCCCTGCAGTCCCACATGAATATCCATCGCCTGCAGCAAAATGACGACGAAGAAGCTGGGGTTGAATGTAAAATCTGTAAAAAGAAGTTCACTTGTCGATATACGCTGCAACGTCATGTCTTCGAGAAACACAATCTGCCAGGTATAATCACGTGCAACATCTGTGAGATGTCCTTTTCCAGCAAATGGGAACATAGCAAGCATCAGGACACTCATGCGTCTAGTAGAAAATTCCAATGCGACCTATGCTCGAAGACATTTGATAAGAAATTTCGGTTACTCTACCATCTGCAAGTACATGAGGCCGAGAATGTTGTCTGCTATTCCTGCTACCTTTGCAAGAAACAGTACACTTCAAGAGAAACGTTTTTGAATCACATTTTGGGATATGTGCAGTATGATATGCAGATTTATTCATGTCCGCAGTGTCCCATTTCATTTTCTGATCCAAGACAGCTGAAGTTGCATTTGAACGAAGAACACAAACTGCCTGTAATAAGTGACCTCAACTACTGCGATATATGTAAATTATCTTCGCCCGATGCCAACTCGTATTACGAGCATTTGTTTGACAAACACGATTACGTAGATATTCTATGCAATGAATGTGGTTGTTACTTTAAGTCTAGGAGGCAATATGATGAGCATTTTATGGCGCACTTTTCGTGA
- Protein Sequence
- MCDKGAFGTTEDFSGGDSDYHHHQGDILCEFENSSGFIDEDSNLNRENISYISGSDVLIGASETIETEISPELEIDTTNSIVIADSDHLQDVPQDTAFIILSSIPMGNTEDLIADTSHEILSSPLDSADADLDTSIANSLVNVLSEQCEDNFNIPKDKIPKSDTIANEKVQNERISKRVRNLVPKTKPTCNICAVVFTTKSSLKRHMPIHLEGNETSGKRGRKPHFGKLSKPMCSICSVEFTNTASLKTHMLIHSGERPFQCDLCEKTFTRNTVLRIHRRLHTGEKPYKCELCHNDFVTKEALARHAMKDHPVETNVNAQKEKPSYKCEVCLKTLCSKYSLQSHMNIHRLQQNDDEEAGVECKICKKKFTCRYTLQRHVFEKHNLPGIITCNICEMSFSSKWEHSKHQDTHASSRKFQCDLCSKTFDKKFRLLYHLQVHEAENVVCYSCYLCKKQYTSRETFLNHILGYVQYDMQIYSCPQCPISFSDPRQLKLHLNEEHKLPVISDLNYCDICKLSSPDANSYYEHLFDKHDYVDILCNECGCYFKSRRQYDEHFMAHFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -