Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: salm
Assembly: GCA_963576555.1
Location: OY754958.1:14126397-14136842[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.00026 22.1 1.7 1 23 283 305 283 305 0.98

2 9 1.9e-06 0.00029 22.0 1.7 1 23 311 333 311 333 0.98

3 9 1.7 2.5e+02 3.3 2.5 5 23 577 595 574 595 0.85

4 9 9.4e-08 1.4e-05 26.1 0.2 1 23 601 623 601 623 0.98

5 9 0.00075 0.11 13.8 0.9 1 23 633 655 633 655 0.98

6 9 0.00076 0.11 13.8 0.2 3 23 813 833 812 833 0.98

7 9 0.00087 0.13 13.6 4.5 1 23 839 861 839 861 0.97

8 9 4.1e-06 0.00061 20.9 3.0 1 23 977 999 977 999 0.96

9 9 6.5e-08 9.8e-06 26.6 0.7 1 23 1005 1027 1005 1027 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.00026	22.1	1.7	1	23	283	305	283	305	0.98
2	9	1.9e-06	0.00029	22.0	1.7	1	23	311	333	311	333	0.98
3	9	1.7	2.5e+02	3.3	2.5	5	23	577	595	574	595	0.85
4	9	9.4e-08	1.4e-05	26.1	0.2	1	23	601	623	601	623	0.98
5	9	0.00075	0.11	13.8	0.9	1	23	633	655	633	655	0.98
6	9	0.00076	0.11	13.8	0.2	3	23	813	833	812	833	0.98
7	9	0.00087	0.13	13.6	4.5	1	23	839	861	839	861	0.97
8	9	4.1e-06	0.00061	20.9	3.0	1	23	977	999	977	999	0.96
9	9	6.5e-08	9.8e-06	26.6	0.7	1	23	1005	1027	1005	1027	0.98

Sequence Information

Coding Sequence: ATGTGCTCGATTTTTCACAACCGAATTAATTACCGAGGTCCTAAGACTGGGAATGTAGCTGGCGGTGGAGGTGGTACCACAAATGAGCCATCGCCTATTAAAGATGACCCAGATCGGAATAACAATAGCAGTGGTGATGGGCCAGAGCCTCTTCTTCATATACAACAGAGTGATGATGAAGACGAGGAGGAGGAAAGCGTGGAGGAGGCATTGGACTTATCGGTAATGCCACGTCTGCCTGCCACCGGACATGTGGCTCTTGAAGCGCTGCAGCACACGAAGGTGGCTGTAGCACAATTCGCCGCCACAGCAATAGCCAACTCTCAGAATTATGACGAAGCCGTGAGTGATTTAGCCGTAGTGCAATCGACGATATTTAATGTGCAGCGCCAGCAACTCATGCAGATGCAACTGATACAGCACCTGCAGTCGCAGCTTAAGCATCGGGCAGAGGAAGATTTCGAGGAAGAGGACGATGAAGAGATGGAGGAGGAAAGACTTACATTGAAAGAGGAAGACGATGGGATTGTATCTCGCCAGAGCACTGAACACATCCCAGAGAAAGAAAAGACTGAAATGAAAGAGGAAGAGAAACCAAGCGGGGAACAGGAGTGCACAAAGGCATTCCAACCGCATCTGTGTGACATCAGCTCATCATTTGCTTCCAGCATTATCACCAATCACGACCCCCCACCGGCACCCAATGAACCCAATTGCTTGGAGATGCTCCAACGGCGAACTGAGGAGGTGCTCGACTCAGCCTCGCAGAGCGTGCATGCGAACCAGTTAAATGATGAGTTTAACTATTCGAAAAAGGATGGTCAGGGTAGGGGAGAAATATTCAAGCATCGCTGTAAGTACTGTGGGAAAATTTTCGGTTCCTATTCGGCTCTGCAGATTCACCTGCGATCACATACTGGAGAGAGGCCCTTTCAGTGCAACGTTTGTGGCAGTAAATTTACAACTAAGGGCAATTTAAAGGTGCACTATCAGAGGCACACTCAAATATTCCCCCCAATGTTGATGCCTCCTTCTCAGAATGCCGAACAATATCCCCAGTACCATCATCCAGGTATGGTTCCTCCTGGAAATCCACCAATAAGATTACCATTTCCCTCTTTCGTCCAAACACCTCCGTTTCGCCTAACCTGTTCACCGACCCGCGAAAAAGAAGTAACCCCCATAGAAAAGAATATGCAACcacaaccacaaccacaacCACAATCGCATCCGCAACCGCAACCGCAATCGCAACCACTACAACAGCCGCAATCTCAACAACAAGATTCACAGAGACCCCAACCACAGACTGAAGCACAGGATTTGCGAAAGACTATCGCCGACGAGAAAGTTGAAATACATCCAGCTGAAGAGAAACCAAAGAAAGATATACCCCAGCGGCAAGAAACACTTataacaccaccaccaccaacacaTCGTCGAAAACGAGTGGCAAGCCCTCGCGAATCGCATCATCCCCCATCAAGACTCATCGATGAAAATGTTCCCGAAAACCTTTCAAAATCATCTCGCCGATCATCTCTAAGCAGAGGATCAGCTACCAGCCTCGAACAAATACCCTCCGAATACTCTTTGGCACAGATGGAACGCCTTATCGACAAGTCTTGGGAGGATCTCATCGAGATCGATAAGACATCGGAGACATCAAAATTGCAACAGCTTGTTGACAACATAGAAAACAAACTTACCGATCCGAATCAGTgcattttttgtcaaaaagtCATGTCCTGTCGTAGTTCCCTACAGATGCACATTCGCACTCACACTGGGGAGCGACCATTTCGGTGTCGAATCTGTGGACGAGCCTTCGCTACAAAGGGCAATCTTAAGGCCCACATGAGCATTCATAAAATCAAACCTCCAATGCGTAGTCAATTCAAGTGCCCGGTATGTCATCAAAAGTTCTCGAATGGAATAATTTTGCAACAGCATATAAGGATACACACCTTGGACGATGGCGATGGTGATCGTGCAAAGTATAGTGAGATATCCTTATCTATGTCTATGTCGAATGCGGAGGATCAAAGTTCCACACGCTCGATAAGCACTTCGGATAACATGGACTTTTCACAGTCAGAGTATTCTGGACAGAGGTCGGAATCGTCACAGGGTGATTTTGATGACTTTACAATGGCCAGTGAAGAAGAGTCCCCCACGGAGGCGAATAGCGAAGAACGAAGGGAAGATAAAGAACATATTGATGAATCTGAGGGTGGAAGTAATTCTGATGAGAATGGTGCAATAGACTTATCGGCGAAAAGTGCTGACAGTGAAAAGACCTCGGAGAATACTGGTGTTAGTTTGGTGCCGAATTTCCTATTAATGGCGCGAGACAATCGAAGTCCACCAAAGTTTCCAATGCTGCCGTTTGGACCACTAAGAATAATTGCTGGTCTTCGAGGTGCGGCAAACATCTGTAACATTTGCTTTCGTATCTTTCCCAATACAACCGAGCTGGATCTTCACATTCGGACTCATACCAAAGAGGATAACTTCAAGTGCTCCATCTGTGATAAAGGCTGCGCCACTAAAGAGGAATTCCATCATCATATTCTGGCTCACAGATTTCGTCGAGATTCTGATTCCAGTCATAATCAAAACTCTACTAATTTTTCCAATGACGAAATGCATTTAGAAGCGAGTCAAAGGACATTTAAAACTGAATTAAACACAAATGATAATCAAAAACCACTATCCCCTAGCGGAGGTTCGTCTTCGACAATGACTTCCGAAAACAATATTGGAGGCGATGCAGAACATTCCCTTATGAAGATGCAACTTCTGTCTTCTCTGCCCAATGAGTCACATATGCAGTCGTCTTCGGAATCACCTCGGTTTAATCAAAATTCACTATTAAAACAGCAAGAGCTTCAACAAAATGCTCAAGAACAACCTGCAAACAATAAGCATTTCTGCACCGTTTGTCGAAGAAACTTCAGTTCTAGTTCTGCATTGCAGATACATATGCGTACTCATACTGGAGACAAACCATTTCAGTGCAATGTGTGTCAGAAGGCATTTACTACCAAGGGCAATCTAAAGGTTCATATGGGCACCCACATGTGGACAAATCCAGCCTCGAGACGTGGTCGGCGAATGTCATTGGAGCTTCCAATGCATAGGCCCAATCTACCACAATTAGGTACACATCAAGACTCTGAGCTCTTGTCCCGCAGACCAGAAATATTCTTTCCCTATTTACCACCATTTTTTAATGGTCTTCAACCAAAGCCTGTTGATCTACCATCAGGATCCTTTCCGGGTCTTCCCCCACCTCCCTTTCCCAATGGCAGGTCTCAAAAATATTCTGATCTTATGGGATTCGCTCCATTCCTCGGACCTCCTTACAATTTCCCTCCACTTCCAAATTTAGATCGAATAACTAAATCACCAATGGATGAAAAGCACTCCAGAAGTCCACAGGAAAGTCCCACAAATGGACCTTCACAACACCATCAACAGTTTAACAATCAACAATCGCTTTCAGTGAAAAAGGACTTTCATCATGATGAGTTCGTCAAAGGGTGA
Protein Sequence: MCSIFHNRINYRGPKTGNVAGGGGGTTNEPSPIKDDPDRNNNSSGDGPEPLLHIQQSDDEDEEEESVEEALDLSVMPRLPATGHVALEALQHTKVAVAQFAATAIANSQNYDEAVSDLAVVQSTIFNVQRQQLMQMQLIQHLQSQLKHRAEEDFEEEDDEEMEEERLTLKEEDDGIVSRQSTEHIPEKEKTEMKEEEKPSGEQECTKAFQPHLCDISSSFASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSVHANQLNDEFNYSKKDGQGRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFQCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPSQNAEQYPQYHHPGMVPPGNPPIRLPFPSFVQTPPFRLTCSPTREKEVTPIEKNMQPQPQPQPQSHPQPQPQSQPLQQPQSQQQDSQRPQPQTEAQDLRKTIADEKVEIHPAEEKPKKDIPQRQETLITPPPPTHRRKRVASPRESHHPPSRLIDENVPENLSKSSRRSSLSRGSATSLEQIPSEYSLAQMERLIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCRICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTLDDGDGDRAKYSEISLSMSMSNAEDQSSTRSISTSDNMDFSQSEYSGQRSESSQGDFDDFTMASEEESPTEANSEERREDKEHIDESEGGSNSDENGAIDLSAKSADSEKTSENTGVSLVPNFLLMARDNRSPPKFPMLPFGPLRIIAGLRGAANICNICFRIFPNTTELDLHIRTHTKEDNFKCSICDKGCATKEEFHHHILAHRFRRDSDSSHNQNSTNFSNDEMHLEASQRTFKTELNTNDNQKPLSPSGGSSSTMTSENNIGGDAEHSLMKMQLLSSLPNESHMQSSSESPRFNQNSLLKQQELQQNAQEQPANNKHFCTVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPASRRGRRMSLELPMHRPNLPQLGTHQDSELLSRRPEIFFPYLPPFFNGLQPKPVDLPSGSFPGLPPPPFPNGRSQKYSDLMGFAPFLGPPYNFPPLPNLDRITKSPMDEKHSRSPQESPTNGPSQHHQQFNNQQSLSVKKDFHHDEFVKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00389819;
90% Identity: -
80% Identity: -