Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: -
Assembly: GCA_963576555.1
Location: OY754960.1:78669878-78672308[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00053 0.08 14.3 0.0 3 23 103 124 102 124 0.93

2 12 0.00059 0.09 14.1 0.5 1 23 133 156 133 156 0.96

3 12 7.3e-05 0.011 17.0 2.2 2 23 163 184 162 184 0.97

4 12 0.018 2.7 9.5 1.3 1 20 222 241 222 244 0.91

5 12 0.0024 0.36 12.2 1.0 2 20 248 266 248 269 0.93

6 12 7.6e-05 0.012 16.9 0.1 1 23 275 297 275 297 0.97

7 12 0.42 63 5.2 0.4 1 23 420 445 420 445 0.90

8 12 1e-05 0.0016 19.7 0.2 1 23 452 474 452 474 0.99

9 12 2e-06 0.00031 21.9 0.1 1 23 479 501 479 501 0.98

10 12 8.7e-07 0.00013 23.0 2.4 1 23 507 529 507 529 0.99

11 12 0.0069 1 10.8 4.5 1 23 535 557 535 557 0.98

12 12 0.0049 0.74 11.2 0.8 2 21 564 583 563 584 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00053	0.08	14.3	0.0	3	23	103	124	102	124	0.93
2	12	0.00059	0.09	14.1	0.5	1	23	133	156	133	156	0.96
3	12	7.3e-05	0.011	17.0	2.2	2	23	163	184	162	184	0.97
4	12	0.018	2.7	9.5	1.3	1	20	222	241	222	244	0.91
5	12	0.0024	0.36	12.2	1.0	2	20	248	266	248	269	0.93
6	12	7.6e-05	0.012	16.9	0.1	1	23	275	297	275	297	0.97
7	12	0.42	63	5.2	0.4	1	23	420	445	420	445	0.90
8	12	1e-05	0.0016	19.7	0.2	1	23	452	474	452	474	0.99
9	12	2e-06	0.00031	21.9	0.1	1	23	479	501	479	501	0.98
10	12	8.7e-07	0.00013	23.0	2.4	1	23	507	529	507	529	0.99
11	12	0.0069	1	10.8	4.5	1	23	535	557	535	557	0.98
12	12	0.0049	0.74	11.2	0.8	2	21	564	583	563	584	0.94

Sequence Information

Coding Sequence: atggtGGAAATGTCGACTGGTATTATGTTTGACATGGAAGACAAGCTGCCACATCACATGTGCAACAATTGTCTGCAAGCAGTTGAGGCAGCTTTTGCCTTTCGCAATCAATGTCAACAAATCGATGAAGTTCTCAAAGGTTTACTCCCCTCAAAGGAAGCACCAGCAGTCGTCACTGAAGCAGATTGCAAAACCGAGGTAATACAAGAGCTCGAGGCAGCCGAAGTCATTCAAGTAAGACAGCAAATCAACGACTGTCAAGTGTCGTTTGTTGTGGACGGATTGACAGAACCCATCAACGAACCATGCAGTCTTTGTGATGAAACTTTTCCCAACGACACGGAACTGGAAGCCCATATGGCTGAAAGTCACCCAAGCAAGAGTAAAAGGAAGCTCTTCAAATGTGGAATCTGCTCGAAGGAATATATCTTCCGAAATGGACTTCACAATCACATGGCTATCGCgcatacagaaaaaaaagaaatcaagtGCAATATATGCCTCAGAAAATTCAAGAAGCAGGAGAGTCTGCGGGCTCACAAAAACCGACATTGCGTCCCGCCAATTGCGGTTAGTCGTCTGAAGAAGGGTCCGGCAAAAGTTATTCTGCATCCGGTGTTGGATCATGAAACCTTTGACGATTTGCACattgaaatcaaaaactttTCATGTTCCCTCTGCGACAAGACGTTTGACTTTGAAGTTGAATTCCTCGACCACCTGCCGCACCACAAGACCAGAAAATGTACGCTGTGCAAGAAAAACTTTTCGCGACCAAAATTTTTAGAAGGTCATATATGGAGTCATGGCTTCGAGAGACCTTTTATATGTCCTATTTGTCAGAAAGGTTTTCAAACAAGTTGGGGACTACGCGGTCATATCAAAGGCCACAACCAGAGTGACTTAAGTCAGAAGAAAGCCGCCCAGGAAAGGCAAATGCTGCGAGAACGTGTCCCCGAAAAAGTGTTCCTGCATTTAAAAGAGCCTGATGATTGCACATTGAAGATTGAAAATGACGTTGATCTTAAAGAATCCGATGATTCGAAGCAGACCATCAAGTCGTACGCAATAAAATCAGAGGACAAACAATTGCAAATTCTGGCTAATGCACCCATAGAGGAAAAAATCGTTATTAAGGAAGAAATAATCATAGAAGGCCACTCTCAGTTCTCGtgcaaaattataaatgaacCGATGACCGATGAAGAACCACTCCAAGACCCGACGGAAGCAATTGAGttggacaatttttcaaaatttgcttgCGAAGTAAAGGATTGCGAAATGGAGTTTAAGTACTACACTGGAATGATTAATCACTACACCTATCAGCACTGTAAAAGCCCGGCACCTTTCAAATGCCCCGTTTGTTTGGAGGAATATCCCAGTAAATCGGAACTGCGGGAGCACTTAAGGTCGCATTTAAAATGCGAATACAATTGTCCATATTGTGCCCGTGTATACCCGCAGTTGTATGAATTGAATGCGCACATACGTACGCACACTGGCGAACGGCCATTTAAATGCAGCAAATGTCCGAAGGCGTTCAAGCATCGACCGGCCCTTAGAGTGCATTTAAAGACGCATAACGACAGCAAGGAATTCAAATGCACCATTTGCAATCGAGCGTTCTTTTCGCACAACGGAAAGTTCCTGCACATGAAGAGCCATGAAGTCAACACAGACTTGCAATGCCAGTTTTGCAAAAGACAATTTCCGATCAAGAGTCGTTTGCAACGACACCAAAACGGCATTTGCAAGGCCCGCATTAGAATGACTGAAATTATCTCTTAA
Protein Sequence: MVEMSTGIMFDMEDKLPHHMCNNCLQAVEAAFAFRNQCQQIDEVLKGLLPSKEAPAVVTEADCKTEVIQELEAAEVIQVRQQINDCQVSFVVDGLTEPINEPCSLCDETFPNDTELEAHMAESHPSKSKRKLFKCGICSKEYIFRNGLHNHMAIAHTEKKEIKCNICLRKFKKQESLRAHKNRHCVPPIAVSRLKKGPAKVILHPVLDHETFDDLHIEIKNFSCSLCDKTFDFEVEFLDHLPHHKTRKCTLCKKNFSRPKFLEGHIWSHGFERPFICPICQKGFQTSWGLRGHIKGHNQSDLSQKKAAQERQMLRERVPEKVFLHLKEPDDCTLKIENDVDLKESDDSKQTIKSYAIKSEDKQLQILANAPIEEKIVIKEEIIIEGHSQFSCKIINEPMTDEEPLQDPTEAIELDNFSKFACEVKDCEMEFKYYTGMINHYTYQHCKSPAPFKCPVCLEEYPSKSELREHLRSHLKCEYNCPYCARVYPQLYELNAHIRTHTGERPFKCSKCPKAFKHRPALRVHLKTHNDSKEFKCTICNRAFFSHNGKFLHMKSHEVNTDLQCQFCKRQFPIKSRLQRHQNGICKARIRMTEIIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -