Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: -
Assembly: GCA_963576555.1
Location: OY754959.1:104634237-104636303[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.016 2.4 9.6 1.1 2 23 115 136 114 136 0.95

2 10 0.032 4.9 8.6 2.4 1 23 216 239 216 239 0.92

3 10 7.6 1.1e+03 1.2 0.7 2 22 247 267 246 267 0.82

4 10 7.5e-07 0.00011 23.2 3.9 1 23 316 338 316 338 0.96

5 10 3.4e-08 5.2e-06 27.4 1.6 1 23 345 367 345 367 0.99

6 10 7.6e-08 1.2e-05 26.4 1.2 3 23 382 402 381 402 0.99

7 10 1.8e-06 0.00027 22.1 0.4 1 23 408 430 408 430 0.99

8 10 1.1e-07 1.7e-05 25.8 0.1 1 23 436 458 436 458 0.98

9 10 2.8e-07 4.3e-05 24.6 0.2 1 23 462 484 462 484 0.98

10 10 0.052 7.9 8.0 0.1 3 19 492 508 491 514 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.016	2.4	9.6	1.1	2	23	115	136	114	136	0.95
2	10	0.032	4.9	8.6	2.4	1	23	216	239	216	239	0.92
3	10	7.6	1.1e+03	1.2	0.7	2	22	247	267	246	267	0.82
4	10	7.5e-07	0.00011	23.2	3.9	1	23	316	338	316	338	0.96
5	10	3.4e-08	5.2e-06	27.4	1.6	1	23	345	367	345	367	0.99
6	10	7.6e-08	1.2e-05	26.4	1.2	3	23	382	402	381	402	0.99
7	10	1.8e-06	0.00027	22.1	0.4	1	23	408	430	408	430	0.99
8	10	1.1e-07	1.7e-05	25.8	0.1	1	23	436	458	436	458	0.98
9	10	2.8e-07	4.3e-05	24.6	0.2	1	23	462	484	462	484	0.98
10	10	0.052	7.9	8.0	0.1	3	19	492	508	491	514	0.91

Sequence Information

Coding Sequence: ATGGACAAATGCAAACGTGTTTGTTCCGGCCGCAATGAATCTGAAGCCAAACAGTCCAATGAAGAAGATGAAAATTCCTCGCAGAGCTGTGATGAGCACAAGCACAATACCAGAACTCGCAGTGGAACATATCGCAGGAGTCTGCGTCGTTCTAAACAAAAAGTGAAGCTGCCAAAAGTCAAACCACCAATGAGACATAAAAAACCCGTTAGCATTGTAAAGGAGACAAAAAAGGAACAAAGCAACGGAGATCCAGTGGAGTCAATGATAATAGAGCCAGATATAGGAAAAACGTCTGACATTGAAGAGGACGAATGCATACCAAATGGTTGCAAATcgatcgaatgtttcctttgcGGCTGCAGGCTGAGCAAAATCTACAACTTACGATTGCACATGACCGCGCATGTAAATGAGGAGACTTTCGACATAGAAGTGTTTGAAAATTCGGAAATATTCAACGTCCTGAACCCGCACAAGAGGAATATCGACTCGAATGTCATTCGCAATTTCGTGATTCAGGAAATTAAAGCGAAGCGATATTCACAATTCTATTGCATTCTCAACGAGGCGGCCGTGGAGTTGCACATCAGCGATTCAGAAACCGACTCAGATGGAGCCTGCGATCTTATCCCCCACAATAACTATCGCTGTGAATTGTGCAAGAAGAACTTTGACCGACGCTATAAGGCGCTCTTCCACCAGAAGACCGCCCACCAAAAGACGGATTTTGCCGTCGAATGCGAGTATTGTATGAAAAAGTTCGTCTGTATGAATCTTCTCATCTACCATTTAAAAACGCAGTGCGAAAGCGACGAGAAGCCAGTCCCATGCACAGAGCGATTCATGAAATTCCTCCTCAAATCCAACTTGGACTACTACGCTAACTTAGCTCAGGCTAGGAAGCAGAAAAAATTGAGCAAGCTTACCGAAGCACCCAAGTCGTATACGTGCAAGACGTGCAATAAGTCTTTTACCCGCCAGGAGCATCTCAACCGACACAGTGCGGTTCATCTACCCGATGAGATGAAGTTCGAGTGCCCTGTCTGTGATAGGCGGTTCAATCGGAAAGACAACATGCGCTCACACATGAAGACGCACACCGAGGAGGGAGCCCGAATCGCAGAATCACGGAAAATCCTTTGCTCCTACTGTGGACGGAGTTTTAGCAGTAAATCGAACTACGTGGTTCACATGCGTCGTCACACCGGCGAGAAGCCGTACAAATGCGATGTCTGTGGAAAAGGATTTCCCAAGTCGACGGACTTAAACTCGCACAAGATCACCCACACGGGTGAGAAGAATTTTGTATGTACGATTTGTGGTAAAGCATTTGCTCGGTCGGCGGTTCTATCAAAACACATGCGCGTGCATAATGGGCCCTACGCATGCACTTTTTGTGACAAAACCTTCCCGATGCCTAGCGCCTTGACTGTGCATATCCGAACACACGCCAGCAGTCGACTGGGTATTTGTGTCGTTTGCAATGAGTCCTTTGATTCGAAGACCGAATTGGATGAGCATTTCGCGGCAACAGGCCACACCAACGAACCAAAGCATGTGTTTGTTATCAGAGAAATGGCTCCTCCTCTCAAAGTTATTAAAGAGGTGAACGAAGAACTGGAAACGACACCACCAGTGGTAAACAAAACCAACGATGATCCACTCGAAATCAAAGAAGAGGAATGGCGAACGACAAAGGTGAAAGTGCCTGCGAATGAGGCGATTCAAAGTGTCTTGCAGAGATCAACCAACGCAGGCGGTAGTGCAGAGGTTGCTGCGAATTCGAATGTGGAAATGGTTGCGAACACTGCGAATTATGGTATAATGCCGGCATATTCTCCGTTAAACGATGGATATGACGATGATATGCAATATAACGATTGGTAA
Protein Sequence: MDKCKRVCSGRNESEAKQSNEEDENSSQSCDEHKHNTRTRSGTYRRSLRRSKQKVKLPKVKPPMRHKKPVSIVKETKKEQSNGDPVESMIIEPDIGKTSDIEEDECIPNGCKSIECFLCGCRLSKIYNLRLHMTAHVNEETFDIEVFENSEIFNVLNPHKRNIDSNVIRNFVIQEIKAKRYSQFYCILNEAAVELHISDSETDSDGACDLIPHNNYRCELCKKNFDRRYKALFHQKTAHQKTDFAVECEYCMKKFVCMNLLIYHLKTQCESDEKPVPCTERFMKFLLKSNLDYYANLAQARKQKKLSKLTEAPKSYTCKTCNKSFTRQEHLNRHSAVHLPDEMKFECPVCDRRFNRKDNMRSHMKTHTEEGARIAESRKILCSYCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFVCTICGKAFARSAVLSKHMRVHNGPYACTFCDKTFPMPSALTVHIRTHASSRLGICVVCNESFDSKTELDEHFAATGHTNEPKHVFVIREMAPPLKVIKEVNEELETTPPVVNKTNDDPLEIKEEEWRTTKVKVPANEAIQSVLQRSTNAGGSAEVAANSNVEMVANTANYGIMPAYSPLNDGYDDDMQYNDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01254233;
90% Identity: -
80% Identity: -