Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: -
Assembly: GCA_963576555.1
Location: OY754958.1:36931233-36949626[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.2e-05 0.0064 17.7 0.3 2 23 115 136 114 136 0.97

2 10 1.4e-06 0.00022 22.4 1.2 1 23 142 164 142 164 0.99

3 10 2.3e-06 0.00035 21.7 2.6 1 23 170 192 170 192 0.98

4 10 2.5e-06 0.00038 21.6 0.2 1 23 199 221 199 221 0.99

5 10 1.1e-05 0.0016 19.6 1.1 1 23 227 249 227 249 0.97

6 10 1.8e-05 0.0027 18.9 0.2 1 23 256 278 256 278 0.99

7 10 3.9e-07 5.9e-05 24.1 1.4 1 23 284 306 284 306 0.98

8 10 0.00027 0.041 15.2 0.3 1 20 312 331 312 334 0.93

9 10 6.4e-06 0.00098 20.3 1.1 2 23 341 362 340 362 0.97

10 10 4.2e-06 0.00063 20.9 0.9 1 23 368 391 368 391 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.2e-05	0.0064	17.7	0.3	2	23	115	136	114	136	0.97
2	10	1.4e-06	0.00022	22.4	1.2	1	23	142	164	142	164	0.99
3	10	2.3e-06	0.00035	21.7	2.6	1	23	170	192	170	192	0.98
4	10	2.5e-06	0.00038	21.6	0.2	1	23	199	221	199	221	0.99
5	10	1.1e-05	0.0016	19.6	1.1	1	23	227	249	227	249	0.97
6	10	1.8e-05	0.0027	18.9	0.2	1	23	256	278	256	278	0.99
7	10	3.9e-07	5.9e-05	24.1	1.4	1	23	284	306	284	306	0.98
8	10	0.00027	0.041	15.2	0.3	1	20	312	331	312	334	0.93
9	10	6.4e-06	0.00098	20.3	1.1	2	23	341	362	340	362	0.97
10	10	4.2e-06	0.00063	20.9	0.9	1	23	368	391	368	391	0.97

Sequence Information

Coding Sequence: ATGTTCGAACAGCAAATCAAATCGGAACCGCTGACATATTATTCGACATGTCCACCCCCTCCACAGGAGGCTCATCAAATTCGAACTCAAAATTCGCACCATgttcaacagcaacaacagggTCAGCAAAGCAATCAACATCAACAACGGTCAGTTATAACGGCAattgacaataaaaataatgtgcTGCATTCACAGATTTTGCTGgcTCAACAATCAAGTACCCCCATATCCGATGTTCCCGATGGACTGAAACCTGAAATTATCCAACCGAATGTCTTGTCAATATCATTATCATCTACAAACAGTACTGGATCAGGACAATCTAGAAGTAAGCCTCAAGTATGCAAGGTTTGTGGTAAAATGCTTTCGTCTGCAAGCAGCTACTACGTCCACATGAAATTACACTCGGGAACTAAGCCATTTCAGTGCACAGTGTGCGAAGCTGCGTTTTGCAGAAAGCCTTACCTTGAAGTGCATATGCGAACTCATACTGGTGAACGACCATTTCAGTGCGAGCTGTGCTTAAAACGATTCAGTCAAAAATCTTCCCTAAACACTCACAAGCGTATTCACACAGttcaaGATCGCCCCTTCCAATGCGAACAATGCCCAGCAACATTTGCACGCAAACCCTACCTAGATATCCATATGAGGACGCATACTGGTGAACGTCCATTCGAATGCGATGTGTGCCTAAAGCGCTTTACTCAAAAATCATCACTTAATATTCACAAAACTGTTCATAATGTTGGAATACGACCATTTCAGTGTACACTTTGTCCAGCTGCGTTCGTACGGAAGCCTTATCTTGATATTCATCAACGGACACACACTGGCGAAAGACCTTTTGAATGTGAAATCTGCTCCAAACGATTCTCACAACGATCTACGTTAAATATACATAAACGAATTCACACAGgTGAGAGACCGTATGCATGTGATATTTGCAACAAGACGTTTGCCGTTAAAAGCTATGTAACCGCACATCGGTGGTCGCATGTCTCGGAGAAGCCATTAAGTTGTGATCGCTGTTCGATGACATTTACTAGCAAGTCGCAGTTTGCAGTGCATATCCGTACACATTCAGCGGGACAAAACTTTGAATGCAGCGTATGTGGAAGAGCATTTATTCGTGATAGCTATCTTATAAGACATCACAATCGGGTACATCGACAAGAGCGAACAACAGCTAATAGCATAGCTACTATAAATAGTGTTGCAACTGGAGAAGATATTGGTAATGCAAGTACTCCTGATCGAGTGGATGTTTTCGAATCAAACAGTCCTCAAGTTTGCGATTTACGataCGTACCAAATTTAGTTATGAGCAGATCGCCTGTTGTTTCTGAATTGTCACCAAACGGCAATAGCCAAACAATAACATTGAATCATCCAGAGAGCAACCGAAGTCAAATAAATCTAAATGAAGTTCGCAGTATGAACATTAGTGAACGTCTAATTCAGGATGCCAGAGTTATTCATGAAAGGGCTGTTCAAGAACAACAGCGAGCAATACAAGAGCGCGTTAATCAGGAGCGCATTCtgcaagaaaataatttccaagATAGAACACTACAGGATCAACAACAAGCAATACAAGAAAGATTACTGCAGGACAGTGAGGAGCAAGCGAGAGTCATACAGGAAGCGAATGTTCATTCATCTCTAAGTATACAGCAGAGCCATGTTTTAAATCATAGCAATTTGTTAGATAAATCTTCGGTGATTAGTCCGGGATCAGTTTAA
Protein Sequence: MFEQQIKSEPLTYYSTCPPPPQEAHQIRTQNSHHVQQQQQGQQSNQHQQRSVITAIDNKNNVLHSQILLAQQSSTPISDVPDGLKPEIIQPNVLSISLSSTNSTGSGQSRSKPQVCKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCELCLKRFSQKSSLNTHKRIHTVQDRPFQCEQCPATFARKPYLDIHMRTHTGERPFECDVCLKRFTQKSSLNIHKTVHNVGIRPFQCTLCPAAFVRKPYLDIHQRTHTGERPFECEICSKRFSQRSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAVHIRTHSAGQNFECSVCGRAFIRDSYLIRHHNRVHRQERTTANSIATINSVATGEDIGNASTPDRVDVFESNSPQVCDLRYVPNLVMSRSPVVSELSPNGNSQTITLNHPESNRSQINLNEVRSMNISERLIQDARVIHERAVQEQQRAIQERVNQERILQENNFQDRTLQDQQQAIQERLLQDSEEQARVIQEANVHSSLSIQQSHVLNHSNLLDKSSVISPGSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00312853;
90% Identity: iTF_01541599;
80% Identity: -