Fcup022392.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:19972272-19973138[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-08 1.5e-05 25.4 0.0 2 40 15 53 14 56 0.89 2 2 8.1 5.7e+03 -2.0 0.1 4 12 222 230 221 231 0.88
Sequence Information
- Coding Sequence
- ATGCCTCGCAGCAAGGAAGGTGTTAAAAGAACTCCTTTGGATGAAAATGCCTTGCAGGAAGCTATCAACGATGTTCTCTACAATAAGGAAACAATCGGCAGAGCTGCAAAAGACCACGGTATTTCCAAAACAACTTTGTTTCGTCATCTTCAAATGCATCGGAAATCTGGCGATGCAACGTTTAAATACCAATCAGAAATTGCACACAAAAAAGTGCTTAATGATGAAGAAGAACTTGCCTTGGTTGAATACCTTACCACAGCAGCAAAGCTGCAGTATGGATTAACGAAAATTGTTACAACCAATTTGGCCTTTAGTTTTGCAAAAGCAAATGGAAAAATTCTTCTGGAGTCGTGGATAAAGAACGAAGCTGCTGGCAAAGAGTGGATGATTGGCTTTCTTAAACGGCACCAAACTTTATCGCTCAGAAAGCCAGAGTCGACCAGCCTTTCCAGATCAACCAGTTTTAACCGCTGCAATGTGGGACAATTTTTTACCAATTTGGAAGATTGCTATTCCCGTTTTAAATTTTACCCAAGTAGAATTTACAATCTTGACGAAACTGGAAATTCAACGGTTCACGTCCCACCGAAAGTTTTAGCTGCCAAAGGTGAAAAACAAATAGGAAGCAGCATGACCTCGGGAGAAAGAGGAATAAATGTCACTATGGTTGCGGCTATTAATGCAATAGGAACTCATGTTCCGCCGATGTTGATATTCCCCAGAGTTCATTTCAAGGAACATATGCTTAACGGTGCTCCAGCAGGGTGTATTGGTGGTGCTAATCCTTCCGGCTGGTCAAACGAGCAACTGTTCATTGAGTTCTTCGTACATTTTATAGCACATTCAAAGCCAAACACCAGATGA
- Protein Sequence
- MPRSKEGVKRTPLDENALQEAINDVLYNKETIGRAAKDHGISKTTLFRHLQMHRKSGDATFKYQSEIAHKKVLNDEEELALVEYLTTAAKLQYGLTKIVTTNLAFSFAKANGKILLESWIKNEAAGKEWMIGFLKRHQTLSLRKPESTSLSRSTSFNRCNVGQFFTNLEDCYSRFKFYPSRIYNLDETGNSTVHVPPKVLAAKGEKQIGSSMTSGERGINVTMVAAINAIGTHVPPMLIFPRVHFKEHMLNGAPAGCIGGANPSGWSNEQLFIEFFVHFIAHSKPNTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299955;
- 90% Identity
- iTF_01300806;
- 80% Identity
- -