Fcup024045.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:56583863-56584195[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-11 7.3e-09 36.0 0.0 3 41 17 55 15 59 0.90 2 2 5.5 3.9e+03 -1.5 0.1 27 33 103 109 103 109 0.87
Sequence Information
- Coding Sequence
- ATGCCACGTAACTACGTTTTAAAGAAGCCTCCGCCATCATATTCAGTGGATGACGTCGCAAAAGCGATTAATTacgttcaaaacaaaaatatgacgtTCAGAGCAGCTCAGGACGAATATGGAGTGCCAATATCCGTCATTTATAACAGAATCAAAGGGAGAAAAAACTCCATGGACAAATTCAGACAAGGACGTAAAACTGCGCTTTCTATGTCAGATTTCATTATcttgtatattaaattaaatcaccgTTTACTTTTACCcccgaatttccaaaaaaaagaaaaacatcgttGGGTATTTGTAAACATACCATATCCAAcaataatttaa
- Protein Sequence
- MPRNYVLKKPPPSYSVDDVAKAINYVQNKNMTFRAAQDEYGVPISVIYNRIKGRKNSMDKFRQGRKTALSMSDFIILYIKLNHRLLLPPNFQKKEKHRWVFVNIPYPTII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -