Fcup007311.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- Clic
- Assembly
- GCA_963576555.1
- Location
- OY754958.1:131106909-131118064[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-13 9.8e-11 42.0 0.0 3 41 168 206 166 210 0.86 2 2 1.1e-07 8e-05 23.1 0.0 5 39 280 314 278 317 0.93
Sequence Information
- Coding Sequence
- ATGGGGCTAATGGATTTGGAAACCCTAACTAATTGTATAATACGACACATTAAGGACATGGAAAGATCAAAGCGATCTTCCAAATCCATAAAGATGCAAGCCTCGTGTCCTGCCAACCATAGCTTAGATTTGGAAGAAATAATAAGTATCGATGAATCAGATACAGATTCAAATCATGTACCAGAACCGCCGCTGCCAACATCACAACTTATCACCCCAGTAGATAATGCTGTTTCGACATATGATCAATTCATTATATTCCAGCTGAATACTGAAACAGAACCAATGTTTAATTATGTCATTACTCAAGTGAAGAAACCACCACCAGAAGATGGTGAGCCCATTGAAACGTACACACCGCCACCTGTTGATGATCAAAACGATCATAAAAAACCGCCTAACACTGTTCCATATACAATAAGTGTCGACATACCAACAGTACCGGATAAAGAAGAACAATCGAATGAGAATTCACCAAAATCTAAACGTGCAGCCAAGCGAAAGAAGCTAGCCGAAGCATTAGAGGCAGTCGTTAGCAAGAAGATGTCCATAAACAAAGCTGCTTGTGTCTTTCAAGTCACAAAGAGTACCCTTTGGAAGGAGGTGAACAAACACACCGATCATTGTCGAAGAACAATCGACCCAGAACTAAATAAAGAGATCACCTTTCGTATTTCTGCTGGTGAATCTTTGGCATCAATTTCGAGGGCCCTTAAAGTAACCAAATCTTCTTTGCATCGACACAAAGTCCGATTGGCAGAGCGAGGCGAGTTGCCATCGAATGTTCACTTAAAAACGCCAAGACATCCCTCCGAGACAGTTGCCTTAAAGAAGCGCATCAAACAAGCGTTACATTGCTGTCGTGCCAATGGTATGTCTTGGCGTCTTGCGGCCAAATTATACTCAATATCACCGTCTACAATATCCAAGTATATGCGACGTTTTAAAGATCAGCAATTAGCAGCGGACGAGAGTACTGCTCAACTTGTTGTCAATCGTGCCGAAGTTGATAGCGACGAAGAGCTTTTAGAAGAGGAAACATCCCGGAGCACCGAGCAGGCGGACTTAAACGACTTCGATGTGGATGCATACTGTGAGAAACGAACAGGTACAACCAGCGAAGATGCTGAATTTTCGATCAGTTTTGACTTTGAATCCTTCGAGGAGTTCGCATCAACAATCGATGGAAGACGTAAGGGAGCATGCCTCTTTTGTCAGGAATACTTCATGGACTTGTACCTGTTGGCTGAATTGAAAACAATAAGTTTAAAGgtcaCCACAGTTGATATGCAGAAACCTCCACCAGATTTCCGCACCAACTTTGAGGCAACACATCCGCCAATCTTGATTGACAACGGTTTGGCCATTTTAGAGAATGACAAAATCGAAAGGCACATCATGAAGAATATCCCCGGTGGATATAATCTCTTCGTGCAGGACAAGGAAGTAGCCACCCTTATTGAGAACTTATACTCCAAGCTTAAGCTGATGCTAGTTAAAAaggatgaaaacaaaaacaacgccTTGTTGTCACATTTGAAGAAAATCAACGATCATTTAGCCACACGTGCAACACGCTTCCTAACAGGCGACACTATGTGTTGTTTCGATTGTGAACTGATGCCAAGGTTACAGCACATTCGAGTGGCTGGAAAGTATTTTGTTGATTTCGAAATACCCactcACCTGACACACTTGTGGGGCTACATGTATCATATGTATCAATTAGATGCCTTCACGCAATCCTGCCCAGCTGATCAGGATATCATCAATCATTACAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTGGAGACACCAACATTCACAACGTCAATTCCGATTGACATTTCGGAGTAA
- Protein Sequence
- MGLMDLETLTNCIIRHIKDMERSKRSSKSIKMQASCPANHSLDLEEIISIDESDTDSNHVPEPPLPTSQLITPVDNAVSTYDQFIIFQLNTETEPMFNYVITQVKKPPPEDGEPIETYTPPPVDDQNDHKKPPNTVPYTISVDIPTVPDKEEQSNENSPKSKRAAKRKKLAEALEAVVSKKMSINKAACVFQVTKSTLWKEVNKHTDHCRRTIDPELNKEITFRISAGESLASISRALKVTKSSLHRHKVRLAERGELPSNVHLKTPRHPSETVALKKRIKQALHCCRANGMSWRLAAKLYSISPSTISKYMRRFKDQQLAADESTAQLVVNRAEVDSDEELLEEETSRSTEQADLNDFDVDAYCEKRTGTTSEDAEFSISFDFESFEEFASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLATRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTHLWGYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -