Fcup016504.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754960.1:23214046-23215461[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9e-14 6.3e-11 42.7 0.0 3 43 288 328 286 330 0.91 2 3 0.029 21 5.8 0.0 27 37 359 369 350 374 0.87 3 3 3.4e-17 2.4e-14 53.6 0.0 3 42 397 436 395 438 0.93
Sequence Information
- Coding Sequence
- ATGAACCACCTCAAGTGGATGGGCCATACGTCGACCATTCTTGATATTCAAAAGGCTCTAAAGAACGATGCAGCCACCTGTGATATCACTAtttcttgtcgtggtaaatcgGCCAGGGCCCATCGCTTTGTACTGTCGTCTTGTAGCGACCTATTACGCGATCTGCTAAATGATGTTCCTGTTGGACAGGATGCCACCATAATAGTACCTGACGTCAAAGGTGGTCTATTGGACAGTGTGCTGGGTTTTGTGTACATGGGTGAGACAAGCCTGTCGTCAACAAACTTGTCTGAGTTTCTAGAAGCTATCAGTATTCTCGGCATCAAGAGCGCTATTAGTTTCGAATGTGCCAACAGCAACTCGGTTAGTAGTATCAAAAATGTTGCCGAAATGACTGAGATGGAAGAGGAGCTAATGGAAGCCGAACCAGAACACGAGATAGTCGAAAAGGACGATGAGGAGGACCAAACAGTTGCAGAAACGAACAGTGTCCGCGAATTAGAATTCCTCGAAGTTTACAATGAACAGGAAAAGATAAGCTACACCATCGAGAATATCACACCGACAAATCCCAACGAATATATTCTTACGGAAAGCTCTGGTACTTTCACCTTGACACCGAATGCGAAAATCGATGGCAGTGAGGTTGCTGCTCTGGTCGAGAAACAAGATGAAGACAGTCCCATGATGGAACATTACGTAGGTGACCCAATCGGTGAAAGCAGCCAGTGTTCCAGCACCGACATGAAAGATGAAAAATACTGTAAGAAATTAAAAGATGAATTCAGTGAATTTCAGGCGCTCAGTCCGGAAGACTCGAAGGGATGTCAAAACTTTAGCGAAACACAATCAGCACGTGTCGAGGCACTTGAGAATGCAGTTCTTGCGGTAGTCGATGAAGGCATGAGTTTGCAAAAAGCAGCCATCAAGTTTAACATCTCAAAGACTGTTCTCTGGCGACGAGTAAAAAAACATCCACTCTACATGAAGACAACACGTGAGAATCCCATCATAACAGCAGCGTGTGAGCGCTTAAAAAGTGGTGATTCTCTAAAAAGTATTAGCCAGGCCCTGGACATTCCCATGTCAACCCTGCATCGGCACAAAGTCAGACTGGCACAGGAGGGTCGTTTACCAGAGTATGTTACGTTTAAGAAACGCGGTCCAATGTCGAAGGAAATGCTGAAAGATAAATTAACAAAGGCGGTGCAAGCTTGTCTAGGCAATGGAATGTCGCAAAACCATGCAGCAAATGTGTTTGATGTGCCAAAGAGTACATTGTGGagacatttgcaaaagaaaatgtttcgcCCAGAAAGTAAAAGCGAAATAAGCATCAAAGAGGAAGTCGTATTACCCTAG
- Protein Sequence
- MNHLKWMGHTSTILDIQKALKNDAATCDITISCRGKSARAHRFVLSSCSDLLRDLLNDVPVGQDATIIVPDVKGGLLDSVLGFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANSNSVSSIKNVAEMTEMEEELMEAEPEHEIVEKDDEEDQTVAETNSVRELEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNAKIDGSEVAALVEKQDEDSPMMEHYVGDPIGESSQCSSTDMKDEKYCKKLKDEFSEFQALSPEDSKGCQNFSETQSARVEALENAVLAVVDEGMSLQKAAIKFNISKTVLWRRVKKHPLYMKTTRENPIITAACERLKSGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKDKLTKAVQACLGNGMSQNHAANVFDVPKSTLWRHLQKKMFRPESKSEISIKEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00316154;
- 80% Identity
- iTF_00724934;