Flac020586.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602139.1:2797844-2807013[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1 77 4.4 0.9 1 23 214 236 214 236 0.96 2 13 0.017 1.2 10.1 4.9 1 23 328 351 328 351 0.96 3 13 7.8 5.5e+02 1.7 0.2 2 12 389 399 388 409 0.79 4 13 0.13 9.1 7.3 0.5 3 23 415 436 414 436 0.93 5 13 3.4 2.4e+02 2.8 1.9 9 23 454 469 444 469 0.82 6 13 0.018 1.3 10.0 2.7 1 23 707 729 707 729 0.96 7 13 0.0016 0.11 13.3 0.6 2 23 735 756 734 756 0.96 8 13 0.0066 0.46 11.4 2.4 2 23 851 872 851 872 0.95 9 13 0.0041 0.29 12.0 0.2 2 23 888 909 887 909 0.97 10 13 1.4e-07 9.9e-06 26.1 3.6 1 23 915 937 915 937 0.99 11 13 0.0032 0.23 12.4 0.5 1 23 942 964 942 964 0.97 12 13 0.00013 0.0093 16.7 0.6 3 23 972 993 970 993 0.94 13 13 3.9e-05 0.0027 18.4 4.0 3 23 1032 1053 1031 1053 0.97
Sequence Information
- Coding Sequence
- ATGTCTACAAATAGCAAGAAAAGGAGTAGAAAAGACAAATTGGTGCCCCGTGACTGTAATTTTGAAGGCGAGCAGGGAAACGTTCTGACGCAGGATGAGCCCTACATGAAGCTTGTGAAAATAAAAGCTGAACCAGAATGGGACGATACAATAAAGTCTTCTTCTTTACCGCACATGGAATTCTCTGTAAACGTACAAGTGGAGGAGTACCACGAATGTCATATAAAAGAGGAACCTGAAGACACACCTGATGACGTAATTGACAATAATGCTGTAAAACCTTCAGGAAAACTTGTTAAAACTCCCAAAACTAGACTGAAACCGAAATCAACTACTAAAAATCAAGTGACTGAGACGTTCAAAGCGAGTGTTAGCGAGGAATCTAATGATGTAGACCTGAATGACCGATTGTCATACATGAAATACAAAGAGTATCATATAAATGTGGCAGATTTGGCAACAGAGCCCGAACACATGACTCTAGCCGACAAGCTATTGTACGTAGAAGTGAGGAACATTTTGGGGCAAAGACCTAGAGAGCCAATAGCAGAGAACAAGCTAGATAAGATGATAGAAGTAGCGGTGAACCATACAAAGATTTGGTATATCATGTCTAAATACGGTCAATATCCCGTGTTCTACAAGTGTTACGTATGCAGCAAAGCTTGGTGGCACTTAGATGACTTCCGCCAACATATCCAGATCCACACTTCAAAGGACTTCAAAATACACTTCGAGGAAGATGGGCAAATGTTCACAGCTTCGTTCAATATAATCGGTTACATGAAGACTGTGCCTGAGATTAAGAATATACCGTTAGACGGAGTTTGCTGGCAGTGCTGTCAAGATTACAACCATCATGTATTGAATAATGGTGTGTCTGCTAGCTGTGTCTTCTGCAGGAATACATACCGGTCTTGTAGAATGCAGATCAAGCACCAGAATTCCTGTCAGAAAGCCGCAACCGCTTTTAAGGATCAGTTCTTCTGCTCATATTGTAACATAACTTATTATACCAAGAAAGATTACGATGATCATATGAGACACTATCACAGTGTGAGATCGGACCTTATATCCCTTACGTATTGTAAAGTGTGTTTTGTTTGCAAGGAGAAATATCTTCAATACAGCGTACATGATTGTCCATCCAAGAAGCTGAAGTCCCAATGCATGTTTTGTCACAGGCGTTTCATCTCTGGCCATTTAGCAGACATTCACGCGAGGATAGCCATGCCTGGAAATTGTCCGATTTGTCAGGCTGAATTCCCGAAGTCTTGTATGGTAACGAAGCATATAGCTGAGAAACATACAAAGAATTTTCAATTGGCttataaatgtattctatGTACTAGTTTCTTGGTCTGTATTAGCTATCACAACCTAAAATTGCACATGAAAAAGGCTCACTGTATCAAATTTGATAAAAGACGAACTGGGGCTGCATTGGTAATTCTACCGAAGACATGTTTCGACCCAAATTTCGTGCCATCTGATGGGGATTCTAACGAACCGGATCAAGCGGAGCAAATCCAGACGATGGAGGATGACCAGACTATAGACAGTGCCAGCCAGGATGGATCCGAGAttgAAATTGTTGTTCCATCTAAAAGATCACTACTGAAGACAGCTTTCGAACAAGCAATCAACGGAACGCAAGGCGTGGAAATGGTTGTCTtcaaaactgaaataaaacagGAGCCAGCGGACTTAGAAGAGAATGACATAGACTCAATTCCAGAACATAGAATCAGTAAAGCTGAATTTGATAATATCATCAGTGTCATTGGTGACGTTAAGCAGGAAGTTGAAGATCAAGAAGTTGACGATCAAGAAGATGTTGATCAAGAAGTTGACGATCAAGAGGTGGACGATCAAAAAGGTGACGATCAAGAGGTGGACGATCAAGAAGTTCATGGTCAAGtgtttgatgatgatgaggaaGCAGATGGGATAGACTTCGATCACATAGACGACCTTATAAGCACTAAGCCCAACACAGGCAGCTTACGAAGAAGAAAACCAAAACTGTACAGATGTGCTAGATGTGGTTATGAGGACGTCCATAGACAGTACCGCTGGCACAGAgacaataattgtaaaatttcaaAGTCTGACAAGTATACATGCACTATGTGCGAGAAGAGTTTCAACAAAATGTCGCGGTACCTTCAACATTTTTCCGTGCATGGCGTACCTCACCTGTCTTGCCCGGAATGCTTCCagaaattcaaaaattctgtTAAACTTTCCTATCATGTGAATGTCCATGTGAAATACAACTACATAAAACTAAATCTGATTGATAAATTTTTATCGGAGAAGAAATACCAGTGCAAAAAGTGTGTGAAGTATGTTGAGAACGAAAGGTTTTTCGCACATTGGGAGTCGCATCTCAAACTTGACAAAGTGAAGGTTGAGGATGATAAAACAAACGTGGCCAGTGAAGGCGAGGATCCTATGGGAAGTGTTACTAAGCTGAAGCCGGAGATTATGAGGATTatgataaATCGCCTCCAGTTCACGGAGTCTTCCCAAAGAACTTTGACGAGGGTCTGCGTGGTCTGCAGTAAGCGCTTCGAGAGACACCACGATGTCAAACGACATATTATAGAACATCTGTTAAGCGACGCATACGCCACGAGGCCCACCAACAAAATGTTGGTATGTCAAATATGCGGGAGTGGTTTTGACAAGGCGGAGCGttttaaatACCACATGCGTATCCACGGCTCGATGCCTCTGTACAAATGTGAGCTTTGTGACAAATCGTTCAGCGATTCGAGCAACTTCACCAAACACAAGAAAACCCACAACCTAAAAGTGTTCACGTGCGACATTTGCGCCAAGAAATTTCTATCTAAGATGTCCCTGGAGAAACATATTGAGTTACACAAAGACGTAACGCCGACTGCATGCCAGTCGTGTGAAAAAGTGTTTTACTCCCCCTCCGAGTACAGACGGCACATGTTGAACAGACACACAAAACAGAagctcaaatttaaatgcatCGTGTGCAAGCAGAGGTTTGACTCGTTGAAGTTGAAATGGGATCATATGTGGGAATCGCATCAGGAGAGAAAATACAAAGCGGACTGCCATGTTTGCAGCAAGTCGTTCAGAAAGCGACAAGATTTGAGGATGCATATGAGAAGAGATCACCGTTTGAACGTCACCAATCATTACAGAAAATACAGTTTGAACAAGGATCAAAAGGATAATGTATCCGTTATGGAAGTGAAGATTGAGAATGTGAGAAGTATAGTGTCAGAAGGACATAGTGCAGTGGCGGGAAGTGAAGTGGCGGAAAGTGAAGCGGCGGAAAGTGCAGTGAATAGTGATGGAGATGTTAACGCAAGTGGAATTACATATTCAGTTATTCCGGAGGGAACTTTAAGAGACTTACACATGAATGGTCTGGAAACTCTTGTGTTTTTCGAGTGA
- Protein Sequence
- MSTNSKKRSRKDKLVPRDCNFEGEQGNVLTQDEPYMKLVKIKAEPEWDDTIKSSSLPHMEFSVNVQVEEYHECHIKEEPEDTPDDVIDNNAVKPSGKLVKTPKTRLKPKSTTKNQVTETFKASVSEESNDVDLNDRLSYMKYKEYHINVADLATEPEHMTLADKLLYVEVRNILGQRPREPIAENKLDKMIEVAVNHTKIWYIMSKYGQYPVFYKCYVCSKAWWHLDDFRQHIQIHTSKDFKIHFEEDGQMFTASFNIIGYMKTVPEIKNIPLDGVCWQCCQDYNHHVLNNGVSASCVFCRNTYRSCRMQIKHQNSCQKAATAFKDQFFCSYCNITYYTKKDYDDHMRHYHSVRSDLISLTYCKVCFVCKEKYLQYSVHDCPSKKLKSQCMFCHRRFISGHLADIHARIAMPGNCPICQAEFPKSCMVTKHIAEKHTKNFQLAYKCILCTSFLVCISYHNLKLHMKKAHCIKFDKRRTGAALVILPKTCFDPNFVPSDGDSNEPDQAEQIQTMEDDQTIDSASQDGSEIEIVVPSKRSLLKTAFEQAINGTQGVEMVVFKTEIKQEPADLEENDIDSIPEHRISKAEFDNIISVIGDVKQEVEDQEVDDQEDVDQEVDDQEVDDQKGDDQEVDDQEVHGQVFDDDEEADGIDFDHIDDLISTKPNTGSLRRRKPKLYRCARCGYEDVHRQYRWHRDNNCKISKSDKYTCTMCEKSFNKMSRYLQHFSVHGVPHLSCPECFQKFKNSVKLSYHVNVHVKYNYIKLNLIDKFLSEKKYQCKKCVKYVENERFFAHWESHLKLDKVKVEDDKTNVASEGEDPMGSVTKLKPEIMRIMINRLQFTESSQRTLTRVCVVCSKRFERHHDVKRHIIEHLLSDAYATRPTNKMLVCQICGSGFDKAERFKYHMRIHGSMPLYKCELCDKSFSDSSNFTKHKKTHNLKVFTCDICAKKFLSKMSLEKHIELHKDVTPTACQSCEKVFYSPSEYRRHMLNRHTKQKLKFKCIVCKQRFDSLKLKWDHMWESHQERKYKADCHVCSKSFRKRQDLRMHMRRDHRLNVTNHYRKYSLNKDQKDNVSVMEVKIENVRSIVSEGHSAVAGSEVAESEAAESAVNSDGDVNASGITYSVIPEGTLRDLHMNGLETLVFFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -