Flac017462.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602134.1:2018407-2021829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.4e-06 0.0006 20.5 2.5 1 23 282 304 282 304 0.97 2 11 6.1e-05 0.0043 17.8 2.2 1 23 374 397 374 397 0.97 3 11 0.00028 0.02 15.7 1.2 1 23 401 423 401 423 0.98 4 11 1.7 1.2e+02 3.8 1.4 2 23 445 467 444 467 0.89 5 11 0.013 0.89 10.5 3.2 1 23 471 494 471 494 0.98 6 11 0.015 1.1 10.2 0.2 2 23 517 539 516 539 0.93 7 11 9.3e-06 0.00066 20.4 2.9 1 23 549 571 549 572 0.96 8 11 0.014 0.97 10.4 1.4 2 23 588 609 587 609 0.96 9 11 0.0047 0.33 11.8 0.3 1 23 615 637 615 637 0.96 10 11 0.54 38 5.4 3.2 1 22 643 664 643 667 0.90 11 11 0.00019 0.014 16.2 0.2 3 23 714 734 713 734 0.98
Sequence Information
- Coding Sequence
- ATGGAGCCAGAAATGTTATCTTCTGAAATGAAGATAGAACAACAGACAGAAGCACCTATAAAACTAGAAATAGAAATAGATAGGGATGATGTTGAAGTGAAGGCTGAAGTGGCAGACGAGAATTTACCTGATGACAACCCATTCAAGGACATACAACTAGAAGTAAAACAAGAAATTATATCCTTAAGTCTTGAGAAAGAGAGTATAGATTCACAAAGTGAAGATGGTTCTGTAGTCAAGTCAGAGAACTTTGATCTGGATTCAGAAATGAATGCAGATACACAATTAGATCCAGATATTAAAACCAACAAAGCTAATgtaaaaagtgaaatggcCATGGATGAATCCTTAGTTTCGTATGATTACCCCGGTTTTGATGACTCTCGCAGTATGAATAGTGACGATCTAGCTGCCTTGAGTCAAGTTGAAGCCTGTTTGCATGATGATGCTAATGTCAAATCAGAAGATGATGCCATTGAGGATCAGAAGGATTTCTCTAAAGTTCACATCAAAGGAGAAGAAAGTCCATTAATAACCAATACTCACCTAATAACTAACAAATTAATCAAAACAACGTCAACGGTCACCCATCCACAGGAAGGCCTCATAGAGTCCACAACACGGACTTTAGTCATGGAGATAATGGACATGACTTCAGGAAACGAGCATTTGGCTAAAATGGGAAATCCTGAAGAGATTCTACCAACTACAACAAACTATGAGGATTGTAAAGATGAATATGACGATTTCCAATTGAACTCAATTACTGGGAATGTCCTCACATTAGAACAGGAAGCTTTTGGTTTGTTGAAGGCTAAAAGGAAACGTGATTTGACCAAAACTTATGAATGCACAAAATGTTCCAAGACATACGCGAGGAAGCACGACTTAACCCGTCATTTAGGGGTGCACGAGAGCATCGAGAAACGCGCCCTCGGCATTATTAAGGGTCAAAAGACACGCTGTGAAAACCGCCATAAGAAATTTAAAGAAGAAAGCGAAGAAGAGAAAGTAGTTAAAAAAGAAGGTTACGAATGCACTTGTGGGAATGTATTTCAAAGGCGAAGTCGACTGGAGACTTGCCTCAGATCCCATAATCTTTACTCTAACACAGACATATACCCCTGCCTTACATGTAAGAAACAGTTTAAGAACAAAGAAGAGTTAACACTGCACCGAAAACGGCTACATAGGAAGAGATTCCCTTGTAAATTTTGCCCTACGGACTACAACACACGTAAAGAACTGTTCAAGCACTTGCAAGTGCATCAAAAAGTGCAACTGATGGAGTACAAAGTGATTTCCGAAGTGGTGAAAGGAAAACAGAAGTTAAAGTGTTTTATGTGTGCGAAAACTTATTCTGAACTAACCGAACTAAAGTGTCATGTCATGGAAGACCACGAGGAACCATATAGATGTCTTCAGTGCAACTGTACGTTTCCAAAATTGATAGACTTTGGCAATCATATGAAGACCTACCACCCAGAGGTGGCTGGTCAGTCAGTGCTGGACGTTCTAGAAGCATTCTCCATGTTAGTCCAGGCTTGGAAGTGCGAGGAATGTGGGTTGCAGTTCCACGAAGCGGACAAACTAGCCATGCACCAGATAGAACAACATAGTCCGGAATTAAAAGCCGAACCACAGTTCCAGTGTACGGATTGTCGAAGGGTCTTCATCAGTCAGAAAGGGCTCACATCGCATAGACGCATTCACCACAGTACAGAGAGCGTTGAGGAAACAGCAGCTGTGGAGACAGGTGTCATGTGTTTGGAGTGTCGGAAAATATGCAAGGACATGATTGCGTTAACATCTCACATGCGATTCCACTCGCCTGAACGCAAGTATCCGTGCAAATTCTGCGATTTCCGCTTCGCTACACCCGAGAAAAGAAAAGCCCATGCCGAGATCCATACGGGCGATATGAAATTTGTCTGCTTCATCTGTGAATATCAGTGCAGTTCTGAAAACAGACTTAAACAACATAAACAATCGATAAAACATTTGAACATGAAAGAGTATTTGTTGACAGGCAAGCCTTTAGTAGAAGACCCTTCATCAACATCCAAAGAAAAAGTTAAGAAAAAGAAGAGGAAAGAAAGAGAGAGCACCAGTGGAAGTGAGACGGAGAGTGAGGTAGCGTGTGATATATGCGGCGAAAAGTTCAAACGGGAAGATGAAATGCTGGAACATAAACAGACTCACCCATTCATAGAGTTCCCGAATGACGACAAACCGAGTAGAATATTCTTTAAGTGA
- Protein Sequence
- MEPEMLSSEMKIEQQTEAPIKLEIEIDRDDVEVKAEVADENLPDDNPFKDIQLEVKQEIISLSLEKESIDSQSEDGSVVKSENFDLDSEMNADTQLDPDIKTNKANVKSEMAMDESLVSYDYPGFDDSRSMNSDDLAALSQVEACLHDDANVKSEDDAIEDQKDFSKVHIKGEESPLITNTHLITNKLIKTTSTVTHPQEGLIESTTRTLVMEIMDMTSGNEHLAKMGNPEEILPTTTNYEDCKDEYDDFQLNSITGNVLTLEQEAFGLLKAKRKRDLTKTYECTKCSKTYARKHDLTRHLGVHESIEKRALGIIKGQKTRCENRHKKFKEESEEEKVVKKEGYECTCGNVFQRRSRLETCLRSHNLYSNTDIYPCLTCKKQFKNKEELTLHRKRLHRKRFPCKFCPTDYNTRKELFKHLQVHQKVQLMEYKVISEVVKGKQKLKCFMCAKTYSELTELKCHVMEDHEEPYRCLQCNCTFPKLIDFGNHMKTYHPEVAGQSVLDVLEAFSMLVQAWKCEECGLQFHEADKLAMHQIEQHSPELKAEPQFQCTDCRRVFISQKGLTSHRRIHHSTESVEETAAVETGVMCLECRKICKDMIALTSHMRFHSPERKYPCKFCDFRFATPEKRKAHAEIHTGDMKFVCFICEYQCSSENRLKQHKQSIKHLNMKEYLLTGKPLVEDPSSTSKEKVKKKKRKERESTSGSETESEVACDICGEKFKREDEMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468448;
- 90% Identity
- -
- 80% Identity
- -