Flac000942.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602108.1:13452314-13456982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00027 0.019 15.7 1.1 1 23 294 317 294 317 0.96 2 12 0.0051 0.36 11.7 2.4 1 19 336 354 336 358 0.90 3 12 2.1e-06 0.00015 22.4 3.4 2 23 364 385 363 385 0.97 4 12 0.036 2.6 9.0 2.7 1 23 389 412 389 412 0.95 5 12 0.25 18 6.4 0.1 1 23 415 437 415 437 0.96 6 12 0.00036 0.025 15.4 0.2 3 23 530 550 529 550 0.96 7 12 0.28 20 6.2 0.4 2 23 570 592 569 592 0.95 8 12 9.2e-07 6.5e-05 23.5 3.7 1 23 598 620 598 620 0.98 9 12 0.00072 0.051 14.4 1.5 1 23 625 647 625 647 0.97 10 12 0.0002 0.014 16.1 1.8 2 23 654 676 653 676 0.96 11 12 0.41 29 5.8 2.6 1 19 684 702 684 703 0.88 12 12 0.1 7.3 7.6 2.4 3 19 716 732 715 737 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGGAGTGTGTCCAGATGGACAGCGACACCCATATACCTTTCCTCCTCATTCCAAGAGACTGTACAAGTCTGGTAACGAACTGTGATACTAATGATAACGTATTTATCGACGTGAGCATTACCGCTCCAGACACTGAAGGCGATGAAACGTGTATTTATTCAGGCTACAGCAATGTTAAGCTGATAGATgactacaatataaatataaaccagAATAGCCCAGAAACCGTGTACCATGAGAATGAGTTGCCCGTGATTATATCAGATCCTAACCAGATCCTGTGCCCATCGAACCAGTCCCATGTCTGGATAGACCCAGCCCGTAGCCCCTTTGTTTATAACAACTATGAGTCAACAGAGAGGAAGGACCGGACCAGTAGCTACCAAGGCCCAAGTCATATTACGGTAGAACAgcacaatacatacataacgcAGAATGTGTATAGCTACAAGGAATCTACGCATTACACTATTCCTGAGGATGTTGACCACAAGAAGTGTTGTCAATCAAACGAAGCACAAAACCAagagtataatatttacaaagaagATGAATTTGAATGTGGAGTGTTTTTATCTCAGCTGCCGGAAGAGATAATGAATGAGAAGGTGAATAAAGCGAGAGAGGAACGTAAGTACATAGGGCTGCAGAGTGACAATGAAGCTTTAAAGCAGCTCATGTCTTCAGACATACAATCTATGTCGAAGCAGAGAAAGACAATTTTGTTCTTGGGCCATGATTCTCATTCGGGTCAAACCATACAGAATATTCTGGTCAACGACCCAACCCTGCAGTGTTCGGAGAGTACCAAGACAGACTGTGAAGATATTCATGAAGACTCAAACTCATCAACAACCCCTCCTGGCAAGAAGTATCAATGTGACAAATGTAAGCAGATCTTCAGCCAGATAGCCACCTTCAGGCAACACATGGTCAGCAACCATCGCTCCTATGTCTATAAGTCTATgcagGGCCAAGCAAAAGCGATTGGCGTGAAATTCATGTGTTCAGAGTGCGGCAAAACCCTCAAAAATCAGGAGAAATTTGAAACTCACTGCATGGGCCATGGTGACCCAGAACTAGAATGTAATAAGTGCCACAAAGTATTCGCTTCAAAGTACAACCTGCGCACTCACCGTAAGATCCACGCTCGGAAACACCCCTGCCACTATTGCATTAGGAGCTATGCTACCACTCAAGAGCTGAAGACGCACTTGGCAAAACTACACTTTATATTTTCATGTGATTTTTGCCCTTTTGGGGCCAAAAAGATTTCGGAATTAAGACAACATGAGGCTATTCATGAAAGGGATTTTCATGTGTCCCCTGATGATGAGATGGAGGCAGATATCATCGCAATTCCTGAGAAGCTGGTGGAGAAGGAAAAGGAAGAACCAGAGGTAGAAGAGGGAGAAACAGAGGTAGAAGATGTTGAGGTAGAGAGTGATGCGAAGGGTACTATTCCACAGTATGATCAAATTAGCGAGGCGGATTCGGTGATAGCTAAAGTTATGTCCAACAAGATATTTCTCCTGCACAGCAAGAAGGTCACAAAGAGACAAAGGAAATATAATAAGGCGTGCGACATCTGTTTCAAGCGATTCGAGCGCATCGGAGAACTGAAGCGGCACCTCATAGAACACGTGATCAAGAGCACTCTAGCCAAGACCCCAGTCAATAAGGACGGGACCCTAGTCATCCAGTGCGAGGTCTGCCAACAGGAGACCTTCACCAAAGTGGACAGGTACAAAGCCCACCTCAGAGAACACGCCAAGCTGACACTATACAAATGCACTTTCTGCAACAAATCCTTCAGCGACTCCAGTAACTTCGcaaagcacaaaaaaatacacggCTCAACGTATTACCAGTGCGATCTTTGCCAAAGGAAATTCAACTCTAAAAAGATGATCGCACAGCATATGGATTACCATAGCAACAACGCGCCGGTTGAATGCCAGTACTGCGACAGGATCTTCCACTTTGAGTCCATGTTGAATAAGCATATCAAGTCTACTCATATGAAGGAGGTAAAGAATAAATATAGGTGTAGGTTCTGCCATCGCTTCTTCAGCACTTTGAAGGAGAAGTGGGACCATGAGTGGAATATCCATAACGTTAGGAAGGTGATCGTTGACTGTCGTATATGTGGCTCCAAGTTTAGGAAGTACACTGAGCTTAAGAGACACTGCGTCAACGCCCACTTCTTAGAAATCAATCGGGCTAAACCTATGTTTCGGAAGAGTAAATAG
- Protein Sequence
- MDQECVQMDSDTHIPFLLIPRDCTSLVTNCDTNDNVFIDVSITAPDTEGDETCIYSGYSNVKLIDDYNININQNSPETVYHENELPVIISDPNQILCPSNQSHVWIDPARSPFVYNNYESTERKDRTSSYQGPSHITVEQHNTYITQNVYSYKESTHYTIPEDVDHKKCCQSNEAQNQEYNIYKEDEFECGVFLSQLPEEIMNEKVNKAREERKYIGLQSDNEALKQLMSSDIQSMSKQRKTILFLGHDSHSGQTIQNILVNDPTLQCSESTKTDCEDIHEDSNSSTTPPGKKYQCDKCKQIFSQIATFRQHMVSNHRSYVYKSMQGQAKAIGVKFMCSECGKTLKNQEKFETHCMGHGDPELECNKCHKVFASKYNLRTHRKIHARKHPCHYCIRSYATTQELKTHLAKLHFIFSCDFCPFGAKKISELRQHEAIHERDFHVSPDDEMEADIIAIPEKLVEKEKEEPEVEEGETEVEDVEVESDAKGTIPQYDQISEADSVIAKVMSNKIFLLHSKKVTKRQRKYNKACDICFKRFERIGELKRHLIEHVIKSTLAKTPVNKDGTLVIQCEVCQQETFTKVDRYKAHLREHAKLTLYKCTFCNKSFSDSSNFAKHKKIHGSTYYQCDLCQRKFNSKKMIAQHMDYHSNNAPVECQYCDRIFHFESMLNKHIKSTHMKEVKNKYRCRFCHRFFSTLKEKWDHEWNIHNVRKVIVDCRICGSKFRKYTELKRHCVNAHFLEINRAKPMFRKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724207;
- 90% Identity
- iTF_00724207;
- 80% Identity
- -