Flac019928.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602138.1:1837432-1841093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.13 9.2 7.3 1.6 1 23 70 92 70 92 0.97 2 17 0.03 2.1 9.3 1.1 2 23 162 184 161 184 0.91 3 17 0.00015 0.011 16.5 0.7 3 23 193 214 192 214 0.97 4 17 0.68 48 5.0 3.2 2 23 220 242 219 242 0.94 5 17 1.1 77 4.4 3.2 1 23 246 269 246 269 0.95 6 17 5.6e-05 0.0039 17.9 2.1 1 23 275 298 275 298 0.97 7 17 0.72 51 5.0 0.1 2 23 305 326 305 326 0.90 8 17 0.00018 0.013 16.3 0.6 1 21 332 352 332 353 0.96 9 17 0.00088 0.062 14.1 5.0 1 23 394 416 394 416 0.99 10 17 9.9 7e+02 1.4 0.1 2 21 442 461 441 464 0.69 11 17 0.011 0.75 10.7 0.7 2 23 488 510 487 510 0.95 12 17 6.9e-05 0.0048 17.6 0.4 1 23 516 539 516 539 0.97 13 17 0.047 3.3 8.7 0.4 2 23 545 567 544 567 0.96 14 17 0.00038 0.027 15.3 0.2 1 23 572 595 572 595 0.96 15 17 0.0026 0.18 12.7 2.1 1 23 602 625 602 625 0.94 16 17 0.26 18 6.4 3.3 2 23 632 652 632 652 0.92 17 17 2.4e-05 0.0017 19.0 3.4 1 23 658 680 658 680 0.98
Sequence Information
- Coding Sequence
- ATGGAATTAGAAGCCGCTGAAAGCCAAGGACGACTGAAAAACATCACCAAAGGAGCCGATCCCATTGCTGGAATGTTAATATTAAGTGCACAACCTGAAGGATCGAAGGAATTATCATCCAAGGATAAACTATCAGTGATGAGGCATAATGTGACACAAGTATTGTTAAACTCAAATCTAATGCCTTTTAGGTGGCTAAGGAGCGCATACAGATGCTTCTATTGCTATGACATGTTTCAAGAGCCGAAGGACTTGAAAATTCATCAAACACAACACAATCATCGAGATATACCAAGAGTAATGAGCACTTATTGGGAGCCAGTTGTGTATGTAGATGTCTCAAAGATTTCATGCAAGCTTTGTACGGATGAGATGACGGATATCTTCAAACTATTAGATCACTTAGTAACGCAGCACCAAACTCAATTTGACAGACAAATTGGAAATTGTTTTAGGCCGGTGCTACTCAACGAatcttcggtctcctgtgtCCAATGCCCGAAAACTTATTCCTCATTCAGCCATCTGTTGTTCCACATCGATAAGGATCATATAGTTGAAGTCAGTCCGGTGCTTTGCGATGTCTGTGGCCAGAACTTCAGGAGTGCCAAGCAACTCAATTACCATACGAAGAAGGTACACGAAGACAATGCGGTCGAATGCACTATTTGTCACGAAACTATCAGTAGCATGAACAAGATGCGAACACATCTCCAACACTTCCACAATAAGCGGTACAAATGTTCGCTATGTTCAGATTCTTTTGAAACACACTACAAGCGGTCCCTACACATGATGGCTTTCCATAAGGAGAGGCAGGAATTCAAATGCCAGTATTGTACCAGATCTTTCGTCTACAGGAGTACGATGGTACGCCATGTTAGGGAAATGCACTTGCAGGAGAAGAATGCAGTGTGTAGTATTTGTGGGTGGAAAGCATTTGGTGGAAACAGACTTCAGATGCACATGATGAAACACAGTGATGTCCGGAATTTTAAGTGCCCAGCGTGTGATAAAGCTTTTAAGACGGCGAAGACAATGAAGCAGCATTACAAAGACCAATCTGACTCCATGAAGGCCTATCGGTCAGTGAAAGGAGATAAAGATCGGATCAGAAGATTGGTCACAGTTGTACTTGAAAATTCAACCATAATGCCTTTCAAATGGTTCCTGAATAGATACAGGTGCTTCTACTGCATGCAAACTTTTACTGAGAGTTCAAAATTGAAGaaacacacaaaaacacaTACGGATATAAATTTAGAACACATTTTAAGGACAATCGGGTCGTACAGCAGAATAAAATGGGATGCCTCTGAGATTTCCTGCAAGTTATGCCCGAAGACAATATGGAACTTCGAAGAATATCTCTATCACGCTCGTGAGGCACACGACTTACAAATTGATGAGGATATAGTTGGTAAATACTTTTACGTGTTCAATTTGGCGGATGACTCTCTGACATGCTTAGAGTGTGGTGAAATGTTCGGATTCTTCAATACGCTACtgaaacacacaaacaaatatcATAGTAAGATTAATAAGTTTGTTTGCAATTTTTGCGGACTATCGTTCACTTTGAAAGGCACGCTGGTGAGTCACATAAAAAATTTACACTCGGCAATTCCCAACCAGTGCAAGATTTGCCGCATGACGTTGCCGAGTGTCTACAAGCTGACCCAGCATTATGAGATGTTACATAACACGGGCAAATTCAAATGTCCGATATGCTCGAAGGTTCTAGCTAGCTGGTACATGAAGAAACGCCACCTGGGAACGGTACATGACGTGAAAACGTACCAATTCCCCTGCGGATTATGTTCCAATACGTTTGCAGATAAAAGCAAACTATCTAGGCATAGAATTCAATGTCATTTGAAGGAGAAAACAGCGACTTGTCACATATGTGGACATAAAAGCTTCCCTACAATGTTGAACAGTCACATGACGATACATGATAGCGATGGAGTATTTCAGTGTGGTCAGTGCGATAAGGTGTATAGAAAAAAGAAGTCGCTACGTGTACATAAAAAGAAGCATGAGGTTTGA
- Protein Sequence
- MELEAAESQGRLKNITKGADPIAGMLILSAQPEGSKELSSKDKLSVMRHNVTQVLLNSNLMPFRWLRSAYRCFYCYDMFQEPKDLKIHQTQHNHRDIPRVMSTYWEPVVYVDVSKISCKLCTDEMTDIFKLLDHLVTQHQTQFDRQIGNCFRPVLLNESSVSCVQCPKTYSSFSHLLFHIDKDHIVEVSPVLCDVCGQNFRSAKQLNYHTKKVHEDNAVECTICHETISSMNKMRTHLQHFHNKRYKCSLCSDSFETHYKRSLHMMAFHKERQEFKCQYCTRSFVYRSTMVRHVREMHLQEKNAVCSICGWKAFGGNRLQMHMMKHSDVRNFKCPACDKAFKTAKTMKQHYKDQSDSMKAYRSVKGDKDRIRRLVTVVLENSTIMPFKWFLNRYRCFYCMQTFTESSKLKKHTKTHTDINLEHILRTIGSYSRIKWDASEISCKLCPKTIWNFEEYLYHAREAHDLQIDEDIVGKYFYVFNLADDSLTCLECGEMFGFFNTLLKHTNKYHSKINKFVCNFCGLSFTLKGTLVSHIKNLHSAIPNQCKICRMTLPSVYKLTQHYEMLHNTGKFKCPICSKVLASWYMKKRHLGTVHDVKTYQFPCGLCSNTFADKSKLSRHRIQCHLKEKTATCHICGHKSFPTMLNSHMTIHDSDGVFQCGQCDKVYRKKKSLRVHKKKHEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -