Flac010161.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602121.1:2142123-2150071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.29 21 6.2 0.1 3 23 111 131 109 131 0.96 2 19 0.18 12 6.9 0.1 2 23 135 157 134 157 0.94 3 19 0.11 7.7 7.5 0.8 3 23 383 404 382 404 0.96 4 19 0.39 28 5.8 0.1 1 20 412 431 412 433 0.94 5 19 0.0047 0.33 11.9 0.7 3 23 444 464 443 464 0.96 6 19 3.4 2.4e+02 2.8 0.4 1 23 480 503 480 503 0.86 7 19 0.03 2.1 9.3 2.9 1 23 512 535 512 535 0.95 8 19 0.88 62 4.7 0.5 3 23 578 602 576 602 0.87 9 19 0.19 14 6.8 1.3 2 23 613 635 613 635 0.84 10 19 9.4 6.6e+02 1.5 2.2 1 23 640 663 640 663 0.92 11 19 5e-05 0.0035 18.0 1.8 1 23 669 691 669 691 0.96 12 19 4.3e-05 0.003 18.3 1.3 1 23 698 720 698 720 0.98 13 19 8.4e-05 0.006 17.3 2.3 1 23 725 747 725 747 0.96 14 19 0.00035 0.025 15.4 1.5 1 23 753 775 753 775 0.98 15 19 1.6e-06 0.00011 22.7 1.7 1 23 781 803 781 803 0.98 16 19 6.1e-05 0.0043 17.8 1.9 2 23 810 831 810 831 0.98 17 19 9.1e-05 0.0064 17.2 0.4 2 23 839 861 838 861 0.97 18 19 0.00035 0.025 15.4 0.3 1 23 868 890 868 890 0.97 19 19 0.23 16 6.5 8.0 1 23 896 919 896 919 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCGGATGAATCTGATGATGAGCCGTTATCAGTTTTAGCGGCTTGCAAAAGGTTGAATCCCGATAAGTTCGAGATCACAATCGCTACGCAAGATGAAGAATTGAaacgaaaaaagaaaaagaaaatattgccACCATTgacgataaaaataaacaagaagtCTAAACTTGCGCACCCCCCAGTTATAGAACGGCCGGCTGATGTGTGGTTGTATTTGAAGGACCTTAAGCCGTCAGGCCCGTACAACTGTTTACTTTGTTCCGAGTGGTTTATTAACAAggctaaaattattatacattatgttCTGAACCATAAGAAAGATTTTTGTGGGATTTGTAGATACTTTGTACCTGATAGAGATGCATGGTGGAAACACATAAATTTCCATACCCCATGGCCGTGTTCACAGTGTATTGAAAACTTTCCAACTGAGCAAGAATTACGTCAACACCTAAGTTCTGTGCACAAGTTGGTCCATTGCCGTCTCTGCCACTTCCGTGTGTCTGATGATGAGCAGTACAACACGCATCTATTCCAAAAGCACAATGTCAGTAATGCTTCAAGTAAAGATGAGgatgtactatgggaactcGATGATGAAGGAGATTCTAAATTCCTTTGCTTACTGTGCTCCAATGCAAACAACAAAAGCAGGGCATTCTTCAATCACTACATGGGCTACCATCATTTCACTCTGAAATGCTTTGCTAGAATTATTTCAGGAACAGATCCACCTTTCTCAATAGTTGGTGCGGATGTGACGTCAGATTTTGTTGAGTCGTTTAAACACCATCAAAGGTTTGGTTACATTGCTCTTGAAGATAAATTGATTGAAGATAGTCAAGAGTCAGAACCGCAGAATGAAAGCGCAACATTCCTCAATGTTCTCATTCCTGAAGTGAAACATGAGTTCCTTAGTGAACATGAAGATGATGACAAAACAAGAGCACAGAATGacattacaaaaacatatagaGGCGATGAAGACTTTGATATAACATTAATGGAGGTTGTACTACTGCAGCAGTGCTACTTTGACTATGTTGATGTCACCTTGACTGCTATAAATTCAAACATAATTCCAGAAAACTCTAGTATTGACTACAGACAATTCAAAGAAGATGAGGACAGTCCAGTGGATTGCTCGATatgtaatacaaaatacaataaaatagagGACTTTTCCACACACCTGCTTAAGATGCACAATGTTAAATCAATACCAATATATTCATGTAGGGTGTGTGCAGACACTTTTGATACTCAGAATGAGTTAGTGAGCCATATTTCACAAGAATTAGGGGACTTTGAGGATTTGTGGCTTTGTCAGTTTTGTGACAAAGAGTTTGACAATAGAGAACTAGTAAGGCGACATTTGACAGAGCATATGAATGCAATTGAATTTGACAACTGTTTTAGTCCACATCTGGGATTTAAGTGTAAATTCTGTCCCACCTTGTTTTGGAATGAGACCGACCGAGAGGCCCATCAAGTCAGGGTACACTTCTCAAAACATAAagagcattattataaatgtgagaGCTGTGATGAACTGTTTAGTGACaagATCTGGttcattcatcatcatatgGAGAAGCACCAGAAGTCTGAAGATGAAGGTCCAGGATATCTTCTCAAATGCTGCGTCTGTTGTTTGGTCCTATGCACCCTGGAAGATATGAGGTCTCACTTTGATTGTGAGCACCCTGAGGCCAGAAAGATATACTGCTCTTTAGATGAGTGTAAATATAAACCACTGAGCCAACGAAAGTCTTTTAAGATCCATTTGAGGATGGTTCATATGGGGATACAACGAAGCGAGCGCGGCGCCACTTGCCCAGTGTGCTTTAAAGAGTTCTCTACGCAACGCGCGTGCAGTGCGCACACGGCGCAAGTACACATCTCGGGCAAGTTTAAGTGCAAACTGTGCAGGGAAATGCTGCACACAGTTGATGAGAGAAAACTCCACTACCTAATCAAACACCCGGGTCGGCATCCGTTCGAGTGTAGTGAGTGCGGCAAATCGTTCCAGTACAAGTCTTCTCTGTACATGCACAAACAGGACCACCAACCCAACAAGCAGAGCTACACCTGCACGTTTTGCGGGAAAGTTTTTATGAAAAAGGACTCGTACCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGCCACACCGGCGAGCGGCCCTACGCCTGCCCGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCACCTCGCACGCCAGAACTCATTCAAAAGACACTTCCTACGCGTGTCTGTACTGCGGCCAGACGTTTGTCCAGAAATCGAAGCTCAAGTACCACATCAGGAAACATACTGGagaaaatttggaGACATGTTCAGTTTGTTCAAAGATGTTTACAAGCGCGTGCGCATTGCGTGAACACATGAAGATTCATAATACAGCCAAGAACATTGTGAAATGTCCCCTATgcgACAAGAAGTACGCGGACGAGCGCTACATGCTGCGTCACCTGCGCACGTCGCACGCGTTCGGGCATCGTCTGCACCCGTGCCCGGTGTGCCGCAAGCCGCTCTCCTCGCCCGCCGGCCTGCGACACCACGTGCTCACACACGCCGACACACACACCTACCGgTGCAAAATGTGCCCGAAGTCGTGTTCCTGCAAGCGAACCATGGTGAAGCACTTGCGTCGACGACACGGGATGAAGGGAAACGCAATGAACTTCAAAGATTTCTACATTCGCTTGGATCCAAGGCAATGCGGTCTTGGCTTGGACGATGAAACTATGAACAATATTTTCGGACCATTTAAAGACCCTCCCGAGACTATCCTCAGTGATTTAGTTACCACGAAACCATTAGACCTAAGGCCTCaagataaaaaagaagaagaagaaattgtAGATAAATCTATAGAAATTGTTATAGAACCAATGGAAAAGAAGGAGATAAAAAAAGAACGCAATGTTGAAAGTGATAACGAAGAGGAGCTGGAACCCACAGACTTTGTCAGCGTGAAGATTGAACCGGCCGATGATGATGAAATGGATAGGCCGGGATAG
- Protein Sequence
- MASDESDDEPLSVLAACKRLNPDKFEITIATQDEELKRKKKKKILPPLTIKINKKSKLAHPPVIERPADVWLYLKDLKPSGPYNCLLCSEWFINKAKIIIHYVLNHKKDFCGICRYFVPDRDAWWKHINFHTPWPCSQCIENFPTEQELRQHLSSVHKLVHCRLCHFRVSDDEQYNTHLFQKHNVSNASSKDEDVLWELDDEGDSKFLCLLCSNANNKSRAFFNHYMGYHHFTLKCFARIISGTDPPFSIVGADVTSDFVESFKHHQRFGYIALEDKLIEDSQESEPQNESATFLNVLIPEVKHEFLSEHEDDDKTRAQNDITKTYRGDEDFDITLMEVVLLQQCYFDYVDVTLTAINSNIIPENSSIDYRQFKEDEDSPVDCSICNTKYNKIEDFSTHLLKMHNVKSIPIYSCRVCADTFDTQNELVSHISQELGDFEDLWLCQFCDKEFDNRELVRRHLTEHMNAIEFDNCFSPHLGFKCKFCPTLFWNETDREAHQVRVHFSKHKEHYYKCESCDELFSDKIWFIHHHMEKHQKSEDEGPGYLLKCCVCCLVLCTLEDMRSHFDCEHPEARKIYCSLDECKYKPLSQRKSFKIHLRMVHMGIQRSERGATCPVCFKEFSTQRACSAHTAQVHISGKFKCKLCREMLHTVDERKLHYLIKHPGRHPFECSECGKSFQYKSSLYMHKQDHQPNKQSYTCTFCGKVFMKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTSHARTHSKDTSYACLYCGQTFVQKSKLKYHIRKHTGENLETCSVCSKMFTSACALREHMKIHNTAKNIVKCPLCDKKYADERYMLRHLRTSHAFGHRLHPCPVCRKPLSSPAGLRHHVLTHADTHTYRCKMCPKSCSCKRTMVKHLRRRHGMKGNAMNFKDFYIRLDPRQCGLGLDDETMNNIFGPFKDPPETILSDLVTTKPLDLRPQDKKEEEEIVDKSIEIVIEPMEKKEIKKERNVESDNEEELEPTDFVSVKIEPADDDEMDRPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -