Flac001438.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602109.1:5988984-5994018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.89 63 4.7 0.3 6 23 227 244 225 244 0.94 2 11 0.00012 0.0084 16.9 3.4 1 19 279 297 279 302 0.90 3 11 7.5 5.3e+02 1.8 0.4 5 23 311 329 309 329 0.90 4 11 0.00031 0.022 15.6 0.5 2 23 336 357 335 357 0.96 5 11 6.7e-06 0.00047 20.8 0.7 1 23 365 387 365 387 0.98 6 11 4e-05 0.0028 18.3 0.5 1 23 396 419 396 419 0.98 7 11 0.00022 0.016 16.0 0.2 1 23 425 447 425 447 0.97 8 11 8.2e-07 5.8e-05 23.7 2.3 1 23 453 475 453 475 0.97 9 11 0.00033 0.023 15.5 3.9 1 23 480 502 480 502 0.98 10 11 7.6e-06 0.00054 20.6 6.2 1 23 508 530 508 530 0.98 11 11 0.0022 0.15 12.9 2.1 2 23 537 559 536 559 0.95
Sequence Information
- Coding Sequence
- ATGGAAGTAAAAGACTTGTGTAGATTGTGTGCGAAACAAAACAGTGTTTCTAAAGATTTATTGCATGAAGAAAATAAGGGACTTCTAAAATTGACTCAAGATATCGTTCAAATTGTTGTTTATCAACATGATAATTTACCTTCAAGAGTTTGTATAAACTGTGAAGAGAAAATGGTGTCCTTCCAACTGTTTATGTTAGAATGTTATGAAGCTCAAGAGATTCTgaggaaaacatttattgagAATGTAGACTCAATGGGAATAAAGACGGAAGGAAGTGCTCTTGATTACATTTCACCCATTATTAAGTCAGAGgTTAAAGATGAAATTATTAGAGAAGAATTATGTGCTGAAGAAATtgGAAACTTTCCTTCCAAGTATGAAGAGCATAGTGATGATGACAGGGATAATGACCCTGATTTTGTTGAAGATGATTATCTCTCGGATGATGTTTCTATTGCTGCattaaaacaaagaaaagACATAGAAGTAGAGAACAGAGTACCAACAGAAGAAgatctaaataaattacaggAACTAATGGGGCAGGGTGATTTTAAAGTCAAAAATTTTATCAaGCCCGAATGTACAGCATGCAAACTGAAAATGAATTCATGGACCTCATTGAGTTTTCATGCTTATAAGATTCATAATGAGAAACCATTCACATTCTGCCTGTGTGGCTTTGCAATCAAATCAAAGAGTGTGCTTTATAAACACATAAATGATCACAAATTACAGTGTAAGAAACATAACAGTAGCGTGCAGAAAGAAAATGATGAGTCAAGGGAATCTAATGATTTTAACAATGTCAAAGTTCAAGATTATGTAAATTTCATATGTACAGAGTGTGGTAAGGAATTCAGGAGTTGGTACACATTAAAAAGCCATTGTGagaaaaaacacaaaatacgGCCATTAGTTAAGTGTAAATGCGGCGTTACTCTCAAGTCTAAGTCTGTTATGTACAAACACGTAGCAGACCATAAGAGCCCCGATATATTAGTATGTGACAAATGTCCGCGAATTACCAAAAGTTTGTCCGCCTTgaacaaacataaaatgagACATGTGCCAAAATCAGAAAGGAAATTTATTTGCTCAATGTgtgagaaaatattcaatacaaaagaTGCCCTAAAATCCCATGAAAGATCACATATACCAGTAGAAGAAAGGAAAGTATTCCGGTGCGACATATGTGATTTGATGTTCACAACTCGTTCCTCGGCGTCGTCGCACCGGCGCGTGGTGCACGACAAGGTGAAGGGTTACGTGTGCGACCTGTGCGGCTACGCGTGCGGCACCAATGGAGAATTGCGCCAACACCGCGCCATACATTCCGACGATAAACCCTTCGTATGCAAGATATGCTCCAAGTCGtttaaaacatattcaaaTCTAAAGACCCACGAGGACACACACGGAAACACTTCGTACCAGTGCCACAAGTGCCGGCGCGTGCTCAACAGCCGGCGGACGCTGCGCAAACACTTGCTGGTGCACCAGGACGAGTGCCGCCACGTGTGCTCCTACTGCAATAAAGCGTTCAAGAGGAGGCAGACGCTCAAgGTACACATGCACACGCACACGGGCGATAAGCCGCTATCGTGTCAGTGGTGCAGCGAGCGCTTCGCATACGCGTCTACGTTGCGCTCGCACCGGCTGCGCTGTCACCCCGACAAGATGGCCGCCCGGCCGCCGCACAATTACACCGTCTTCCCGCATGAATCTATGCAACAGAACTACGTGAAAAATGACCTCGCGACGGCGGTCCCCATTGCGAAGAATGAAGTGGAGGTCATCTGA
- Protein Sequence
- MEVKDLCRLCAKQNSVSKDLLHEENKGLLKLTQDIVQIVVYQHDNLPSRVCINCEEKMVSFQLFMLECYEAQEILRKTFIENVDSMGIKTEGSALDYISPIIKSEVKDEIIREELCAEEIGNFPSKYEEHSDDDRDNDPDFVEDDYLSDDVSIAALKQRKDIEVENRVPTEEDLNKLQELMGQGDFKVKNFIKPECTACKLKMNSWTSLSFHAYKIHNEKPFTFCLCGFAIKSKSVLYKHINDHKLQCKKHNSSVQKENDESRESNDFNNVKVQDYVNFICTECGKEFRSWYTLKSHCEKKHKIRPLVKCKCGVTLKSKSVMYKHVADHKSPDILVCDKCPRITKSLSALNKHKMRHVPKSERKFICSMCEKIFNTKDALKSHERSHIPVEERKVFRCDICDLMFTTRSSASSHRRVVHDKVKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCKICSKSFKTYSNLKTHEDTHGNTSYQCHKCRRVLNSRRTLRKHLLVHQDECRHVCSYCNKAFKRRQTLKVHMHTHTGDKPLSCQWCSERFAYASTLRSHRLRCHPDKMAARPPHNYTVFPHESMQQNYVKNDLATAVPIAKNEVEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -