Flac019889.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602138.1:1536478-1541703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.9 1.3e+02 3.7 1.8 2 23 49 71 48 71 0.95 2 26 0.0047 0.33 11.9 0.3 2 23 97 119 96 119 0.94 3 26 0.011 0.74 10.7 0.7 1 23 141 163 141 163 0.93 4 26 0.012 0.88 10.5 0.4 3 23 169 190 168 190 0.95 5 26 0.48 34 5.5 0.2 2 22 194 214 194 214 0.91 6 26 0.23 16 6.5 1.2 2 23 222 244 221 244 0.91 7 26 0.034 2.4 9.1 1.3 1 23 251 274 251 274 0.86 8 26 0.0013 0.093 13.6 3.5 1 23 278 300 278 300 0.97 9 26 0.25 18 6.4 0.1 2 12 307 317 306 318 0.89 10 26 2.8 2e+02 3.1 2.6 2 23 394 416 393 416 0.94 11 26 2.7 1.9e+02 3.2 0.1 2 23 442 464 441 464 0.93 12 26 0.00098 0.069 14.0 0.6 1 23 486 508 486 508 0.96 13 26 0.00066 0.047 14.5 1.7 3 23 514 535 512 535 0.94 14 26 0.69 49 5.0 0.3 3 22 540 559 539 559 0.94 15 26 4 2.8e+02 2.6 1.4 2 23 567 589 566 589 0.83 16 26 0.031 2.2 9.3 2.6 1 23 596 619 596 619 0.84 17 26 0.00019 0.013 16.2 2.7 2 23 624 645 623 645 0.97 18 26 4.2e-06 0.0003 21.4 1.8 2 23 652 673 651 673 0.97 19 26 0.55 39 5.3 0.4 2 23 765 787 764 787 0.93 20 26 0.00013 0.0091 16.8 2.4 1 23 835 858 835 858 0.96 21 26 1.7 1.2e+02 3.8 0.9 3 20 865 882 864 883 0.94 22 26 0.0053 0.38 11.7 1.8 3 23 893 914 891 914 0.93 23 26 0.5 36 5.5 0.2 3 23 923 944 921 944 0.92 24 26 0.038 2.6 9.0 1.9 1 23 949 971 949 971 0.94 25 26 5.8e-06 0.00041 21.0 0.7 1 20 977 996 977 999 0.94 26 26 0.0018 0.13 13.1 2.1 1 23 1005 1028 1005 1028 0.97
Sequence Information
- Coding Sequence
- ATGCTTTGTTATGGCCTGTACGGACAACGGATCGTCGCACCGAAACATAGAGTGCGGCCCAGAACGCGCTCGGACCAGAAGAACCCCATCGCTATACTAAGACACACGACTGCCTACCCTTTTACCCACCAAAGCAGAAGTTTACGATGTTATTTCTGCCGATACGTGACCGAGGATTGTGAACTGTTCAGACAGCATGTCGATACGGAACATTCGGGTGTCGACAGATCGGAGTGTCTCGCAACAATCGCCAGTGCTACCCAACCACGGGTAGATATAACCAATCTATCCTGCAAGAAATGCAGCGAAACATTTTCGACTTTGGAAGCGGTTGCGCAACACTTAATCAGTAAACACCGCGTGAATATCAAATTAGACAAAAGCCTAGGCCTCGTACCGGTCCGACTGGAAAAGGATAGGTTCGTTTGTCTCGTGTGCAGTAAGAAATTTACGGGCTCCTTACAATTGTCCCGCCATTCTGGCTCCCATTTGGCTAAAAACATTTGCGACCTATGTGGCAAAAGGTTGCAGACGAAAAGGTCGCTGGAGCTTCACGTAATAAAAACACACATGCCAAACACGTGCAATTTCTGCAAAGAATCCTTTGCAGATGTGAAGGCGAAGATCGAGCATGTTAGAACTACTGAGAGATGCATGCCGTGCGTGTGTACAATTTGTCCACGACGCTTTTTATTCTGGGAGAAGATGCAGCAACATTTGGAACAGGACCATGGCGTGCCGAAATTGATGTTTCCGTGCAAGGAATGCGGCGAAGTGTTCCCCAAACGtcaattgttatattttcactTCAAAAGAACACACACGGACGAGTTTAAGTGTCCGCACTGTGAAAGGAGGTTCTCGTATAAACAGCAGGTTGTTGAGCACAGCCGTCAACACACAAAAGAACGGCCCCTCCAGTGCACAGACTGCGAGAAGTCATTCGCAAACGGACAACGGGTACTGATCATCGCGCCGAATTTTAAAGAGCGGCCCAGGAAACGCCCGGACAGGAGCAACCCCATCACTATACTAAAACACAGGAATCCCTCCCCTCTTGCCAACCAAAGCAGTTTCGAGTCGCAATGTAGCAACCGCATGAGCTTGGCTAAGAGAAACGCCACTTTTATACTAAGCCACACGACTGCCTACCCTTTCACCCACCAGACCAGATATTTACGATGTTGCTTCTGCCGATACGTGACCGAGGATTCTGAACTGTTCAGACAGCATTTCGATACGGAACATTCGGGCGTCGATAGATCGGACTGTCTTAGAACAGTCGGCAGAGCCTCCCAACCACGGATAGATATAACCAATCTATCCTGCATGAAATGCAGCGAAACATTATCGACTTTGGAAGCTGCCGCTCAACACTTAATCAGTGAACACCGCGTGGATATAAAACTGGACGAAAGTCTAGGCCTCGTACCGGTCAAAATGGAGACGGATAGGTACGTTTGTCTCGTGTGCAATAAGAAATTCACGGGCTCCCTACAATTGTCCCGCCACACTGGCTCCCACTTCGCTAAGACCATTTGCGACCTATGTGGCAAGGGGTTTCAGACGAGGAACTCGCTGAAACACCACGTGGAAAAAACACACACGCCAAACATGTGCCATTTGTGCAAGAATATCTTCTCCGACGCCAAAGCAAAGATCGAACACGTTAGAACTACCGAGAAATGTATGCCGTGCGCCTGCAATATGTGTCCGCGACGCTTTCTATTCTGGGATAAGAGGCAGGAGCACTTGGAACAGGATCATGGCGTACCGAAGTTGACGTTTCGCTGCAAGGAATGCGACAAAGTGTTCCCCAAACGTATACTGCTGTATTTTCACTTCAAAAAGACACACACGGACGAGAATAAGTGTCCGCACTGTGATAAGAGGTTTCCTACGAAGCAGGATTTTGTGGAGCACAGCCGTCAGCACACAGGAGAACGGCCCCTCCAGTGCACCTTCTGCGAGAAGACGTTCACCAGACAAAACACTTTGCGGACGCATATGATCATTCATGATGATAGCAAAAAGAGAGTCTGTTCCGTTTGTAACGAGAGACATGAGCCTAATATCATCGCGAGAAAGAACGCCGAGATAGTCGTGAAATACGCCACAGTTTATCCATTCAGGCTGCCAGAGAACACGGTCATGTGTGTCTACTGCGCGGAGACTATTGAAAACCCACTAGACTATGGGCCCCACATGGATACCGAACACAGCGTGTTCAATGTTAAGATGGCTTTCATTCACTGCCACGAAGGGTTTATCAAAGTTGATTGTACAAATATTCGCTGCAGAATTTGCTTCCAATCATTCGATGACATAAAAACTATAGCGGAACATCTCAAGTTGAAACATCGCCAGCCCGTGATTCTGGATGGCGAATTAGGAATGCAGCCTTTCAAATTTGATAAAGACAAACTTGCATGCGCTATTTGCAGCGAAAAGTCTATCTGTCTAAGACAATTGAGTAGGCATACACAAAGCCACTTTCTAAGGTATACCTGCGAAGCTTGCGGCAAGTCTTACGTAACCCTTACGACGCTTAAAAACCATATAAGGTTCTGCCACAGCGCGGGCGAGAGAATCTGCAGGAAGTGCAAGAGTACTTTCGATACTTTGGACGACAAGAGAAAACATCTGACAGATTCACCTAAATGCTGGCCACATTTATGCAACTTTTGCGGAAAACGGTTTATGACTTGGACATTGAAACAGGTCCATTTGAGAGACGTGCACGACACTAGGAGAAAAGCATACGGCTGCCCGGAATGCGGGGAGGAATTCTTGGATAGAAGGCGTTATCGGATACACTTTAAAATATCGCACACTGACGACAACTTTGCATGCTCGTGCTGTGGCCTGAAGTTTGAGTCGAAGAGGAGCTTAGAGGAGCACCGCGTTACCCATACAAAGGAGAAGCTGTTCCCTTGTACGGTGTGCTCGAAATCTTTTCCAAGAAAAAAGAATTTGACCCAGCATATGTGGATACACAGTGAATACAAGAGGTTTGAATGCAAGCCTTGCAATAAACAGTTCAACCAACGTGTCAGTTGGAAGACGCATATGAAGTCGTATCACCCAGAATTGGTAGACTTTGAAACGGggaaaaataatcatatcaaattgttattatctGTGCTGAAAAATTCATAG
- Protein Sequence
- MLCYGLYGQRIVAPKHRVRPRTRSDQKNPIAILRHTTAYPFTHQSRSLRCYFCRYVTEDCELFRQHVDTEHSGVDRSECLATIASATQPRVDITNLSCKKCSETFSTLEAVAQHLISKHRVNIKLDKSLGLVPVRLEKDRFVCLVCSKKFTGSLQLSRHSGSHLAKNICDLCGKRLQTKRSLELHVIKTHMPNTCNFCKESFADVKAKIEHVRTTERCMPCVCTICPRRFLFWEKMQQHLEQDHGVPKLMFPCKECGEVFPKRQLLYFHFKRTHTDEFKCPHCERRFSYKQQVVEHSRQHTKERPLQCTDCEKSFANGQRVLIIAPNFKERPRKRPDRSNPITILKHRNPSPLANQSSFESQCSNRMSLAKRNATFILSHTTAYPFTHQTRYLRCCFCRYVTEDSELFRQHFDTEHSGVDRSDCLRTVGRASQPRIDITNLSCMKCSETLSTLEAAAQHLISEHRVDIKLDESLGLVPVKMETDRYVCLVCNKKFTGSLQLSRHTGSHFAKTICDLCGKGFQTRNSLKHHVEKTHTPNMCHLCKNIFSDAKAKIEHVRTTEKCMPCACNMCPRRFLFWDKRQEHLEQDHGVPKLTFRCKECDKVFPKRILLYFHFKKTHTDENKCPHCDKRFPTKQDFVEHSRQHTGERPLQCTFCEKTFTRQNTLRTHMIIHDDSKKRVCSVCNERHEPNIIARKNAEIVVKYATVYPFRLPENTVMCVYCAETIENPLDYGPHMDTEHSVFNVKMAFIHCHEGFIKVDCTNIRCRICFQSFDDIKTIAEHLKLKHRQPVILDGELGMQPFKFDKDKLACAICSEKSICLRQLSRHTQSHFLRYTCEACGKSYVTLTTLKNHIRFCHSAGERICRKCKSTFDTLDDKRKHLTDSPKCWPHLCNFCGKRFMTWTLKQVHLRDVHDTRRKAYGCPECGEEFLDRRRYRIHFKISHTDDNFACSCCGLKFESKRSLEEHRVTHTKEKLFPCTVCSKSFPRKKNLTQHMWIHSEYKRFECKPCNKQFNQRVSWKTHMKSYHPELVDFETGKNNHIKLLLSVLKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -