Flac019911.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602138.1:1746698-1750413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0047 0.34 11.8 2.0 1 23 109 132 109 132 0.90 2 19 0.089 6.3 7.8 0.3 3 23 160 181 158 181 0.95 3 19 0.32 22 6.1 5.0 2 23 204 225 203 225 0.97 4 19 0.003 0.21 12.5 0.1 1 23 229 251 229 251 0.98 5 19 0.38 27 5.8 1.3 1 23 256 279 256 279 0.91 6 19 0.29 21 6.2 1.5 1 22 286 307 286 309 0.82 7 19 0.011 0.81 10.6 6.3 1 23 316 338 316 339 0.95 8 19 0.0077 0.54 11.2 4.8 1 23 345 367 345 367 0.96 9 19 2.7e-07 1.9e-05 25.2 2.2 1 23 373 395 373 395 0.99 10 19 0.00037 0.026 15.3 0.3 1 23 497 520 497 520 0.97 11 19 3.5 2.4e+02 2.8 0.0 2 23 547 569 546 569 0.91 12 19 0.16 11 7.1 7.8 2 23 592 613 591 613 0.97 13 19 0.00026 0.018 15.8 0.4 1 23 617 639 617 639 0.98 14 19 0.00053 0.038 14.8 0.9 2 23 645 667 644 667 0.88 15 19 0.34 24 6.0 1.1 1 23 674 697 674 697 0.91 16 19 0.00054 0.038 14.8 2.0 2 23 705 727 705 727 0.97 17 19 0.0024 0.17 12.8 5.2 1 20 733 752 733 755 0.95 18 19 6.5e-06 0.00046 20.8 1.5 1 23 761 783 761 783 0.97 19 19 0.0011 0.076 13.9 6.3 1 23 789 812 789 812 0.97
Sequence Information
- Coding Sequence
- ATGTATGCTCAGGCGGCAAACAACCAGAAAATTCACCTTTCCATAGGTGTCAAAAGGCTGATCAAAATTGAGATTGACACCACCAAGGCACCACGCAAAACTGGGagtaaactaaaatgtattacattGAGCAAGCCAAGAATCGAATGGATTAAGAAGAAAAGCACAAAAGAACCTGAAAAAAAGAAGGTAATAATCAAAATTCCGAGCGAAAAGAAACGACGCTCGTTAAGGTTCGGTGCGGCGGATAAGCATCATGCTAATATCAGGGAGATTCTGGATTGTTCCAACGCCACACCCATCCGATGCCACAGCGGTATTGGGTACGCTTGCTGCTTCTGCGAACTGCAGTTCGTTAATCCATCAGACCTCAAGAAGCATACCACGGATACCCATCAGAATGTAAACGAAGCTAATTTCTTCAAGAACAGAAGAATGGACCAATACATAGTTCGATTGGACATCACCGCCCTATTCTGTAAGCTGTGTAGGCAGAGCATAGATTCCTTGGAACAACTAATAGACCATTTGAGAAATGAACACAGTAGGATTCTGTACAGCGACATCAAGAATCAGATTGTGCCGTTCAAATTCAACGATGAAACTCTAAAATGCTGCATTTGTTTCAACGAATTCCACACGTTCAAAACTCTGATATGGCATATGAATTCCCACTACAGAAACTTTGTGTGTGAGGTCTGCGACGCAGGTTTTGTCATACAGTGTAATCTCGCCGACCACGCAAGGTCTCATAAGATCGGCAGCTTTACATGCAGCTTCTGCCCCCAAATATTCGACACGTATGTGAAGAAAAAAGCACACGAGTACAGACTTCACGTTCGATTAAACCTGTCACATAAGTGTGGGTACTGTAACCAAAAGTTCAAAGAATATAGGGCGAAAGAAATGCATGTAATTGAAATGCACAACGGCCCGCGTACGGTACACAAATGCCAAGCTTGTGAGAAGACTTTCAAACACCGAGGAGTTTTACTCGTCCATCTAAAAAGACACCATTTATTGGAGAGACCACACAAGTGTTCGCACTGCGATATGGATTTCTTTTCTAGAAAGGAACTAAAAGACCACGTTGTGAAGCATACTGGCTTAAGAGAATTCCAGTGTGACGTCTGCTTGAAATCTTTTGGAAGGAAGAGTACCTTGAAAACTCATATGCGGACGCATGCAAGCGATCGTAAGCGTCGGCTCACATTCAGGCCACAGTCAATAAAAGCTGGGCTGCTAGATACAAAAGGAAATAGCAATGCAGATACCAAAGCAAAGATGGAATCACATGAAGAGCCCATAAAGCTACATATGAAAGCTCATAGAATTGAAGCAGGAAGAGAAGGGGAAAAGAAATCGACTATGCATAAGAGAAACGCTGATGATGACAGAAAGATTGAAGTCCGAAAACATTGCCACAATATAATTGAAGTGTTGAAATGTTCCAACGCTACTCCTATACGGAATTGCGCTGGGATTGGATACATGTGCTCCTACTGTGATGGACAGTATCCAGACCCAAGAGATTTGAAGAAGCATACGTTGACAGAACATGCCAGCGTTGCCAGACCGCCGTTCCTCAATTACGTCAACCTCACCCAGCACATAATAAAGCTAGACATTACCAATTTAACCTGCAATCTCTGTAAGGCCTCCATTGACACCATCGAAGCATTTATAATTCATCTGAATGACTTACACAATAAGAAAATGTATACCGATATAAATAATCACATTATTCCGTTCAAATTTGACGGCGAAGAGTTGAAGTGCTGTATCTGTACTGAATGTTTCAGTAAATTTAAAGTTCTACAGACACATATGCATGTGCACTATAAGAATTATTTCTGTGACAATTGTGAGGCAGGTTTCGTCAATTTAAGCTCTCTTAAGAGCCACAGATTGACGCATCAATCTCAGCAACTGAAATGCAATTACTGTCCAAAAGTCTTTAAGAATAAGACGTACAAAAAGTCACATGAAATCGCAGCTCACATTAAAACAGGCTCATTGTACAAATGCGGCTATTGCGTCGAATCGTTTGGTGACTTTCGTAAGCGAGAAACTCACTTGTCAGAAAAACACGGCGTCACATTTGCCGCAGCTAAATGTACTGCTTGCGACAAAGTTTATAAGAATTTCAAGAATTTAAAAGAACACGTGAAAAAGAATCACCTGATGATGAGACCACATAAATGTTCGGAGTGTGACAAGGCGTTTTTTGGGTCCCACGACTTGAAGAGCCATATGATATGCCATACTGGGCTCAAGAGGTTCATTTGTGATACATGCTCGAAGGCTTTCACGTCGAAACACAACTTAGTTTTACACATGAGTGTTCACACTGGTGAGAGGAGGCATAAATGTAAGATCTGTAGCCAGAATTTCATCCAGAGATGCAGCTTGCGTAGACATTTGATTACCAAACACAGTGGTATTGATAACACATAA
- Protein Sequence
- MYAQAANNQKIHLSIGVKRLIKIEIDTTKAPRKTGSKLKCITLSKPRIEWIKKKSTKEPEKKKVIIKIPSEKKRRSLRFGAADKHHANIREILDCSNATPIRCHSGIGYACCFCELQFVNPSDLKKHTTDTHQNVNEANFFKNRRMDQYIVRLDITALFCKLCRQSIDSLEQLIDHLRNEHSRILYSDIKNQIVPFKFNDETLKCCICFNEFHTFKTLIWHMNSHYRNFVCEVCDAGFVIQCNLADHARSHKIGSFTCSFCPQIFDTYVKKKAHEYRLHVRLNLSHKCGYCNQKFKEYRAKEMHVIEMHNGPRTVHKCQACEKTFKHRGVLLVHLKRHHLLERPHKCSHCDMDFFSRKELKDHVVKHTGLREFQCDVCLKSFGRKSTLKTHMRTHASDRKRRLTFRPQSIKAGLLDTKGNSNADTKAKMESHEEPIKLHMKAHRIEAGREGEKKSTMHKRNADDDRKIEVRKHCHNIIEVLKCSNATPIRNCAGIGYMCSYCDGQYPDPRDLKKHTLTEHASVARPPFLNYVNLTQHIIKLDITNLTCNLCKASIDTIEAFIIHLNDLHNKKMYTDINNHIIPFKFDGEELKCCICTECFSKFKVLQTHMHVHYKNYFCDNCEAGFVNLSSLKSHRLTHQSQQLKCNYCPKVFKNKTYKKSHEIAAHIKTGSLYKCGYCVESFGDFRKRETHLSEKHGVTFAAAKCTACDKVYKNFKNLKEHVKKNHLMMRPHKCSECDKAFFGSHDLKSHMICHTGLKRFICDTCSKAFTSKHNLVLHMSVHTGERRHKCKICSQNFIQRCSLRRHLITKHSGIDNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -