Flac019883.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602138.1:1513601-1521602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0036 0.25 12.2 0.4 1 23 73 96 73 96 0.95 2 19 0.0059 0.42 11.5 3.8 1 23 166 188 166 188 0.98 3 19 9.1e-07 6.5e-05 23.5 0.9 1 23 192 214 192 214 0.98 4 19 0.14 9.7 7.2 0.9 1 19 286 304 286 308 0.90 5 19 0.0081 0.57 11.1 0.5 2 23 333 355 332 355 0.96 6 19 0.024 1.7 9.6 0.1 1 23 377 399 377 399 0.98 7 19 1.2e-06 8.2e-05 23.2 0.9 1 23 403 425 403 425 0.98 8 19 0.072 5.1 8.1 0.9 2 23 431 453 430 453 0.88 9 19 2.3 1.6e+02 3.4 0.4 1 23 459 482 459 482 0.78 10 19 1.5 1.1e+02 4.0 1.5 1 12 488 499 488 500 0.93 11 19 0.82 58 4.8 0.1 2 23 586 608 585 608 0.92 12 19 0.00095 0.067 14.0 4.8 1 23 630 652 630 652 0.97 13 19 1.8e-06 0.00013 22.6 1.6 1 23 656 678 656 678 0.96 14 19 0.0053 0.38 11.7 0.8 1 23 686 709 686 709 0.95 15 19 4.7e-05 0.0033 18.1 1.3 1 23 715 737 715 737 0.98 16 19 0.26 18 6.4 0.9 1 23 743 766 743 766 0.94 17 19 9.3e-06 0.00065 20.4 2.3 1 23 772 794 772 794 0.98 18 19 1.3e-06 9.1e-05 23.0 1.2 1 23 800 822 800 822 0.99 19 19 0.00068 0.048 14.5 4.4 1 23 828 850 828 851 0.96
Sequence Information
- Coding Sequence
- ATGTTCCAGTGGTACCGCTTCGCTATGATTGCATTCCTGTGGCTAGCGAAGTTAAAGGAGGTAGTTAGCGCGCGCCAGATGCGCCGCCGGCGCCGCGCTAATAACGAACTACCCGAAGAATCGGAAAAACGTATTTCCAAAACGATGATGCGTAGGAATGCCACGACCCTTCTCGAAAGTTCCACCGCGTGGCCCTTTAGATGGTTCCACAGCGCTTTTTACTGTTCCTATTGCGACGTGAAGTTCGCTGACGTCACGCCGTTAAGGAACCATGTCAAATTAAACCATTTAAATGAAATGCCCACTAAGAAAATATTCGATAAACTCACCGAGAATAACATGGTGAAGATAGACATAGCTGAGTTAGCGTGTAGGTTTTGCAAAAGGCTTCTTAGCGGTTTGGATACTTTGAAGGAGCATTTAGGATTTCATGGGAAACAGATGTGCAAGGAATATAGCGACGGCGTTCTACCTTTTAGACTGGACGAACAGGGTTTTTATTGCCAAATATGCTTCCAGCATTTCGTCAACTTCTCCAAGATTAACGAACACATGAACACACATTACCAAAACTACGTATGCGACGAATGTGGGAAAGCTTTTGTGTCCAAGTCGAGATTTAGGAAACATTTACAGTCGCACGAGAAAGGCAACTTTCCTTGTGGCGATTGCGACGACATTTTGGAAACTAGAGCGGCTAGGATGTGTCATCGGAtgaaagtgcatagaaaagGCCCGGATGGAATGCTTAAAATACATTGGAAGAAAAAGCCAAGAGTGATGCACGACAAAGCCAACGcagctttaattttaaaatattccaatgCGGTTCCGTTCAGGTGGCTTAGAGGGAAGTTTATGTGTGCATATTGTCCGAAAATGTGCGCAGATGCAGCTGAAGTACGATCTCATTGTGATATACATGAAACGTTAGATTTAATAGAGAATCCACAAGTGAGGAATTCATTTCCGTTCAGAGTTGATGTAACAGATTTAAGCTGCACCATTTGCCATGAGAAGGCAGACAACCTGACCGATTTAAAAGAACACTTGAACACAGCTCACGCGAAGAAAGTAGACCCTAATTTCACTGACGGTGTAATACCTTTCGTGTTAACAGGAAAGGAATACAAATGTGTAATCTGTGACGCGCCTTTCGTTGCTTTTATGCGCTTATTCATTCATATGAACGTCCATTTCCAGTCATTCGTATGCTCCATTTGCGGCAAAGGTTTTTCCGGGAAGCACAAGCTGACAGCCCATATTATGCGTCACAATAATATCAGCTCTTCGTGCAGCAAGTGTAATATAGTTTTCGCCAATCACAACGATAGGAGGAAGCATGAAGGTGTCGTCCATaaagttatgaataaatatagatGTCCCGTTTGTGACGTACATATGAGCTCTTACAACGCGAGGATACTGCATTTAGACAAAGTTCATGGTCAGAAAACCGAGTATCGTTGCCACTTGTGTCCTGCTGCTTTTAAGACTTgcTTGCTGGATTTCGATTATAAATGGACCCCGAGAAGCAAGTATAATGACCACAGGGATAACGTGGTCATTATTCTAGAGTGCTCTAATGTACGCCCTTTTCGGTGGAAGCGAGGGGCCTTCACCTGCGCGTACTGTATGGACACGTTCGGAGACTTTGCCGGCGTGAGTAAGCATTCAGCGGAGCACCCGAATAGGGTGGAAGCTATGCGCTTAACACCCGCGTCCTCATACCTGAAAGTAGAAATTACAGACCTAAGATGCGAGTTGTGTTCGAAAAGTATGCAAAATTTAGACGCGCTAGTCGATCACCTCGTATCCACGCACgataaaaagattaaaaaagaacACGGTATCGGCCTAACTGCGGTTTTGATTACAGGCAAAAATTACCATTGTCCACACTGTGACGAGAAATTTGACCTCTTCTCCAAATTGAATCGGCATCTGAACCAACATTTTCCATCCCATATCTGTTTTACGTGCGGCAAATCCTTTGCCACCGCAGATAATCTCAAAGCACACTTCCGCTCACACGAGAAAAAGGAGAATCAACAGTACAAATGCAGTAGATGTAACCTGGTGTTTTCTACACTGGCTATGAGGACCAACCACGTGAAAGCAACTCACCAGCCCCTGATGAGGTACAGATGTCCATACTGCAATGAGTCGTTCAAGAGTTATTCCGATAGAGGGAAACATTTGGAAACCCACGGTAGAAAGGTCGTTTACCCATGCCACCTGTGTCCTGCAGTCTTCCCTATGTGTAACCCAAGAACGAAACACATCAACCAAGTGCACTTAAGGAAGAAGAGATTCTCCTGCCAGCTGTGTACCTACCAGTTCACCACCTCTGGCCAGTTGAAGAGACACATGATCAAACATGGCGGGGAAAGGAAGTATCAATGTCAAGTCTGCAGCAAGGCGTATGCTCGGCCGCACACCCTGAAAGAACACATGAGGAtccataataatgataaacgATTCGTTTGTCAGTTCTGTGACAATGCCTATGTACAGAAATGTAGTCTTCAAAGTCATATAAGGACGCATCACGCGAACTCTGAAAAGATTAAGAAAGTACGATCGAATTGTGATGTTTGA
- Protein Sequence
- MFQWYRFAMIAFLWLAKLKEVVSARQMRRRRRANNELPEESEKRISKTMMRRNATTLLESSTAWPFRWFHSAFYCSYCDVKFADVTPLRNHVKLNHLNEMPTKKIFDKLTENNMVKIDIAELACRFCKRLLSGLDTLKEHLGFHGKQMCKEYSDGVLPFRLDEQGFYCQICFQHFVNFSKINEHMNTHYQNYVCDECGKAFVSKSRFRKHLQSHEKGNFPCGDCDDILETRAARMCHRMKVHRKGPDGMLKIHWKKKPRVMHDKANAALILKYSNAVPFRWLRGKFMCAYCPKMCADAAEVRSHCDIHETLDLIENPQVRNSFPFRVDVTDLSCTICHEKADNLTDLKEHLNTAHAKKVDPNFTDGVIPFVLTGKEYKCVICDAPFVAFMRLFIHMNVHFQSFVCSICGKGFSGKHKLTAHIMRHNNISSSCSKCNIVFANHNDRRKHEGVVHKVMNKYRCPVCDVHMSSYNARILHLDKVHGQKTEYRCHLCPAAFKTCLLDFDYKWTPRSKYNDHRDNVVIILECSNVRPFRWKRGAFTCAYCMDTFGDFAGVSKHSAEHPNRVEAMRLTPASSYLKVEITDLRCELCSKSMQNLDALVDHLVSTHDKKIKKEHGIGLTAVLITGKNYHCPHCDEKFDLFSKLNRHLNQHFPSHICFTCGKSFATADNLKAHFRSHEKKENQQYKCSRCNLVFSTLAMRTNHVKATHQPLMRYRCPYCNESFKSYSDRGKHLETHGRKVVYPCHLCPAVFPMCNPRTKHINQVHLRKKRFSCQLCTYQFTTSGQLKRHMIKHGGERKYQCQVCSKAYARPHTLKEHMRIHNNDKRFVCQFCDNAYVQKCSLQSHIRTHHANSEKIKKVRSNCDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -