Basic Information

Gene Symbol
-
Assembly
GCA_951449985.1
Location
OX602119.1:6929898-6944961[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.48 9.2e+02 0.3 0.1 18 26 424 432 416 437 0.87
2 18 4.6 8.8e+03 -2.8 0.0 18 27 452 461 447 467 0.80
3 18 0.065 1.3e+02 3.1 0.8 17 30 492 506 483 515 0.74
4 18 0.00085 1.6 9.1 2.0 6 38 510 542 507 543 0.74
5 18 0.023 45 4.5 2.9 5 33 537 561 535 571 0.81
6 18 0.0025 4.8 7.6 4.7 18 38 577 598 565 600 0.89
7 18 0.021 40 4.7 2.6 13 32 600 620 594 626 0.75
8 18 0.014 27 5.2 2.6 6 33 618 649 616 655 0.71
9 18 0.015 28 5.2 3.6 5 38 649 682 645 683 0.78
10 18 0.00082 1.6 9.2 0.5 5 38 677 710 675 716 0.85
11 18 0.08 1.5e+02 2.8 5.8 13 38 712 738 705 745 0.80
12 18 0.036 68 3.9 5.0 13 38 740 766 733 772 0.81
13 18 0.062 1.2e+02 3.2 0.5 17 30 772 786 765 799 0.74
14 18 0.0097 19 5.8 4.6 6 38 790 821 787 822 0.79
15 18 0.0061 12 6.4 3.6 5 38 816 849 814 850 0.81
16 18 0.011 22 5.5 2.9 6 33 845 872 842 877 0.77
17 18 0.00029 0.57 10.6 4.2 6 38 873 905 872 906 0.83
18 18 0.003 5.8 7.4 2.4 18 38 912 933 907 933 0.90

Sequence Information

Coding Sequence
ATGAATCCTGACCACCATAATATCAACACGGGTGGTGGCCAACCTCCTGGAACTTCTGAGACGCAGGGTCAGAGAATCCAATCGGCACAGCAGCAACAGAGCAATTTGACTCCCACGACATCAGCGACTGATCTGCGAGTCAATTCTGCCGCTGTGAATGTCGCTTTGTCTAGCGTCGCTAAATACTGGGTGTTTACTAATTTATTTCCCGGACCAATACCGCAAGTTTCCGTGTATGGATTGCCAACCGGAGCGAGGAttgaaaatggaaaacctGTGCAGGACCTTGGACAAGCCCACGCAAGTATACTTAATGGAGACCCCAATTTGATACTAGGACATCATGGTGGGCAATCACAGGTTACTGTTTCTGCTGGTTCCCAACAGATTCCTGTATCACAAATTATTGCTACACAGTCTGGACAGACACATGAAGCGCTTGTGGGCCATGCTACAGAGCTGCAGGCCGGCACGGTAGCGGTGAGCGCTGCACAGTCGTCGCATCACCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGgGTCACCACTCCCAACATCATCTAATGCAGCAACAGCTACTAGCATCTACGCGCCAAGATCATGGCAACCAGCAGATCCAACTGACTGTGAGCGAGGACGGTATAGTGACGGTGGTGGAACCGGGCGGTGGCAAGCTAGTGGACAAAGATGACTTGCACGAAGCCATCAAGATGCCCACAGACCACACGCTCACCGTACATCAGCTGCAACAGATTGTGGGGCAGCAGGTAATAGACAGCGTAGTGCGTATAGAGCAGGCGACGGGCGAGCCGGCGAATATACTCGTGACGCAGAACGCGGACGGGACCACCTCCATCGAGGCCAGCGCCGGCGACTCGCTCATCGTCAAGGATGAGAAGAATTCCAAACTCGAAGCTCAGTACGCCATACCCACAGACATAAAGGACATCAAAGGAATCGACTTAAAGAGTGTAGGAGCAATGGGTATGGAAGGCGCGGTAGTAAAGATATCGGCCGGTGCTACGGACCACGATCTCCACGCTATGTATAAAGTGAATGTTGAGGATCTCTCGCAGTTGTTGGCCTACCACGAGGTGTTCGGGAAACTGAACGCGGAGGGCCAGCAGCAGCAACAACAACCGCAACAGCAACAGCAGCAAAATCAGGCTAAGGTTATATCTGAAATAGAAGTAGAGGTACCGGGGACAAGCGCTGCGATGTCCGAAGCCGAAACTTCGCCTGGCCATCACTCATGTGATATTTGTGGGAAGATTTTCCAATTCCGATATCAACTCATTGTTCATAGACGATATCATGGCGAGAGCAAACCCTTTACGTGTCAAGTGTGCGGGTCCGCGTTTGCTAACCCAGGGGAGCTATCGAGACACGGAAAGTGTCACCTTGCTGGTGACCCGGCGGAGCGCGTCGCCAAGAGGTTGACTCAAGACAAGCCATATGCCTGCACTACTTGCCAAAAAACATTCTCCCGGAAAGAACATCTGGACAACCATGTGCGCAGCCATACTGGAGAAACGCCCTACAGGTGTGAGTTCTGCGGCAAGACGTTTACGCGCAAGGAACACATGGTGAATCACGTGCGCAAGCACACGGGCGAGACGCCGCATCGCTGCGACATCTGCAAGAAGAGCTTCACACGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACTGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTTTACTAGGAAGGAGCATTTAGTGAACCATATGAGATCACACACAAACGATACTCCGTTCCGATGCGAATTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCACACGGGTGAAACTCCCCACCGCTGCGACTTTTGTTCGAAGACGTTCACTCGCAAGGAGCACCTGTTGAACCACGTCCGCCAGCACACGGGCGAGTCTCCGCACCGATGCAACTTCTGCTCGAAGTCGTTCACGCGGCGAGAGCATCTCGTCAACCACGTGCGCCAACACACAGGAGAGACGCCCTTCCAATGCGGATATTGCCCCAAGGCCTTCACCAGAAAGGACCATCTAGTGAACCACGTAAGACAGCACACGGGCGAGTCTCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCATCTGACCAACCACGTGCGGCAACACACAGGCGAGTCGCCCCACCGCTGCACCTTCTGCGCCAAGTCTTTCACCAGGAAGGAACACCTCACTAACCACATTAGACAGCACACGGGCGAAACGCCACACAAGTGCATGTTCTGCCCGCGTGCGTTCGCTCGCAAGGAGCATCTCAACAACCACGTGAGACAACACACCGGCGCCACGCACTCCTGCACCTACTGCAGCAAGACATTCTCTAGGAAGGAGCATCTTGTCAACCATGTCAGGCAACATACCGGCGAGACTCCCTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAAGAGCACCTCACGAACCACGTACACCAGCATACGGGAGAGACGCCACACAAGTGTCCGCTCTGTACTAAAACATTCTCCAGGAAGGAACACTTGACCAACCATGTCAGGATTCATACGGGCGACTCTCCGCATCGCTGCGAGTTCTGTCAGAAAACATTCACGCGCAAGGAGCACCTGACGAACCACCTCAAGCAGCACACGGGCGACTCCACGCACACCTGCAAGATATGCACCAAACCATTCACTAGGAAGGAACACCTTATAACGCATATGAGatCTCACAGTTGCGGCGAGCGTCCATTCAGCTGCGGTGAGTGCGGCAAGTCGTTCCCGCTAAAGGGGAACCTGTTGTTCCACGAACGCTCGCATAACAAGGCCAGTGCCGGCGGGCGGCCCTACAGGTGCGAGGTCTGCTCTAAGGACTTCATGTGTAAAGGTCACCTGGTGACACACAGACGCACTCATACCGAGGCGGGAGAAACTGCCCCAAACACTGAAACGCCTGCGGAAACCGAAGATTGCAATGATTGCACTAACAAATGCATCAAGAGTGAGGGCGAACGCCCAGACAGAAAACCTGATGTCTTGAGAACAAGTACAGAGAACAGGCCAGCAGAAAATAATGTTGCACAAAACCAACAAGCGAACACTACTGTGATGCAAATCACAAGTCAACAAGTGCGCGGGGGCACAGCGGCCAATACATCCGTGCCTGCGGGAAGCTTCACGCACTCCGGCGCGACGCTCGCCATACACCCCGTCACCGTAAACTACTAG
Protein Sequence
MNPDHHNINTGGGQPPGTSETQGQRIQSAQQQQSNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQAHASILNGDPNLILGHHGGQSQVTVSAGSQQIPVSQIIATQSGQTHEALVGHATELQAGTVAVSAAQSSHHQVPNNRVEFVQHHNIDMGHHSQHHLMQQQLLASTRQDHGNQQIQLTVSEDGIVTVVEPGGGKLVDKDDLHEAIKMPTDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTQNADGTTSIEASAGDSLIVKDEKNSKLEAQYAIPTDIKDIKGIDLKSVGAMGMEGAVVKISAGATDHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQQQQPQQQQQQNQAKVISEIEVEVPGTSAAMSEAETSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPGELSRHGKCHLAGDPAERVAKRLTQDKPYACTTCQKTFSRKEHLDNHVRSHTGETPYRCEFCGKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKFTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCMFCPRAFARKEHLNNHVRQHTGATHSCTYCSKTFSRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVHQHTGETPHKCPLCTKTFSRKEHLTNHVRIHTGDSPHRCEFCQKTFTRKEHLTNHLKQHTGDSTHTCKICTKPFTRKEHLITHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKASAGGRPYRCEVCSKDFMCKGHLVTHRRTHTEAGETAPNTETPAETEDCNDCTNKCIKSEGERPDRKPDVLRTSTENRPAENNVAQNQQANTTVMQITSQQVRGGTAANTSVPAGSFTHSGATLAIHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_00468340;
80% Identity
iTF_00724118;