Basic Information

Insect: Fabriciana adippe
Gene Symbol: ush
Assembly: GCA_905404265.1
Location: FR989986.1:16412362-16415237[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0051 0.46 11.6 0.2 1 20 122 141 122 143 0.94

2 9 7.6e-05 0.0069 17.3 0.9 1 23 180 202 180 202 0.98

3 9 0.14 13 7.0 0.8 3 20 233 250 232 252 0.92

4 9 1.4 1.3e+02 3.9 2.7 2 21 492 511 491 512 0.90

5 9 0.0044 0.4 11.8 0.1 3 21 541 559 539 560 0.90

6 9 0.38 35 5.7 0.1 2 23 588 609 587 609 0.95

7 9 0.0074 0.68 11.1 1.3 1 23 615 637 615 637 0.99

8 9 0.39 35 5.6 0.7 1 23 674 697 674 697 0.95

9 9 1.1 97 4.3 0.7 3 20 730 747 729 749 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0051	0.46	11.6	0.2	1	20	122	141	122	143	0.94
2	9	7.6e-05	0.0069	17.3	0.9	1	23	180	202	180	202	0.98
3	9	0.14	13	7.0	0.8	3	20	233	250	232	252	0.92
4	9	1.4	1.3e+02	3.9	2.7	2	21	492	511	491	512	0.90
5	9	0.0044	0.4	11.8	0.1	3	21	541	559	539	560	0.90
6	9	0.38	35	5.7	0.1	2	23	588	609	587	609	0.95
7	9	0.0074	0.68	11.1	1.3	1	23	615	637	615	637	0.99
8	9	0.39	35	5.6	0.7	1	23	674	697	674	697	0.95
9	9	1.1	97	4.3	0.7	3	20	730	747	729	749	0.93

Sequence Information

Coding Sequence: ATGTATGCCTCGACCGAAGCCCTGATCTGTCTGACGTCGACAGATAGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCAGGAGAACCTCGTACGCCAAGCTCTGGCGGGGAGCGACCAGCCTCTAGTGGTGGCGCATCACCTACTTCGGAAGGTTCCGCTGCTGCTTCTCCACCACGCCTTCGTCTTAATCCTAGTCTAGCCACAGACCCGGCTCTTGCACCTCAAGCTACATCTCTAAAACATGAACCGCCATCACCATCACCCCCGCCGCCGCCAGCTAGAGATTATGGTTTGGCACTTACAGCTGCGAACTTCTCAGTGCTATTTCCAGCAGCGGCCGCAACTCCGCCTGGTTACATGTGTAAACCATGTGGCATTCGATATTCTTCGCTAAGCACTCTACAGGCACATCAAGAACACTACTGTTCAAAACGCAGAACTAAACCTGATGGAACAGAGGCACCTGCAGACGCGGCTGCAGATGAATCAAGCGGTGATTCTAAAACACCTCGGCCACCAGGCAAGCAATATGCTTGCACTTACTGCTCATACAGCGCCGACAAAAAAGTTAGTTTGAATCGTCATATGCGAATGCATTCTTCATCGCCTGTTAGTAGTGGCACGCCTGTACCACCACCCACTTCTAACGGTGAAGCTGTAGAGGGACCACCAGCCCAAGATCGTTATTGTGTAGATTGTGATATCCATTTCACTTCGGTCAAAACATATAGAGCTCACAAAGCACACTACTGTAACACCAGACAAGTTGTCAAGCAAGTTTTGGCTGCGGCTAGAACGGGATCTGCTACTTCAGGATCTGCTCCACCATCTCCGGGGGCAACTCCTCCTGCCCAAAGTCAATATGCATTAGCTTTACCAACGAATCCAATTCTAATAGTTCCATATTCAATATTACAAAGCGCTAGTAGACTTCCAGGCGCCACACTGCCAGATCCAGACACACCATGCTTTTTATTACCAAATGGAACTCTACAACCCATTAGCCGGGCTTTACCAAATATAAATTCAGAATTAAAAGAACCTGAAGTTTTAAAATCTGCAAATAGACCACGTGAACCATCACGAGATGGAGCCACGCCTTTAGATCTGAGCGTCCGTCGTACCCCAGAATCTGTAATAACTGATGAACACGAGAAAGAAAATAGAATGCGTTCTACTACTCCAGAGCAAATAGTCTGCGCCCCCTCATTACCTGGGTCTCCTGGAACACCATCTCCTTCAAGAAGATCATCTTCACCCAGTGGAGAAAGTTCTCCCAAGCGACGCCGCCGTAATTCAAGAGGGCCGACACCTAAACCACCTTGTGTACCTTCACCGCCTGAAGAAAAATTTACACCAGTAGTACCCCCTCCAATTATGCCACCCGCCCTAGCGCTACGACTAGCGACTGAATTACCTGTAACAACAGCGTCCCCTCAAGTATTGGTCAAACAAGGCGTGTCAAAATGTATAGAGTGCAATATTGTTTTTTGCAAATTTGAAAACTATCGTATTCACAAACGACACTATTGTTCAGCTGGAGGAGGAGAAGAGAGAGCTAGCCCAGCACCTCCGGAACCTGGTCCACCTCCACAGTACAGGCAACTAATTTGCTTGGCGTGTGGTATACACTTTAGTTCATTAGACAATTTGACAACACATCAATTATATTACTGTACAAAAAGAGAGACCCGATCGCCACGTAGTTTACCGGAAGCTCCGAGGCCTTCGTCGGGATCTGATGGTGGATGGAAGTGTCCATGTTGCGACGTAGTGTCACCAACGGCTGCGGCGGCGCAGCGACACATGGAGTCTCACGCTGGAGTCAAAGCGTTTCGCTGCACGATCTGCAGATACAGAGGAAACACGCTAAGAGGCATGCGAACTCACATACGTATGCATTTTCGCGAAAAACCAGCTGATCTTCAGGAGGAGAGCTATATCTCATGTGTGCTTGAAGAAGACAATCGCGAGACCACTTCACCCAGCCCAGCAGTGGGAGACCGAGTCCACAGGTGTGGGTCGTGCGCTTATACCTCCACGTACCGTGGTAACGTAGTGCGACACGCGCGTCTTGTCCACGCCACAGAAGACCCTGAGCCCGAAGAGCAGACGTCACCAATACCTCCTGTCGATATTAAAAAAGAACCAGAGACTGAAGAGGACACGCCTAATTTCTGCAAGTCCTGCAACATACCGTTCAAATACGTAAACACGTATAAGGCTCACAAACAGTTTTACTGTACTGCAAACCAAGACACAGCCGCCAACAATAACGTACCAGCGAGGGTCAACGACGCTCCTGTTGTATAA
Protein Sequence: MYASTEALICLTSTDSEDEEWGNESEAMPGEPRTPSSGGERPASSGGASPTSEGSAAASPPRLRLNPSLATDPALAPQATSLKHEPPSPSPPPPPARDYGLALTAANFSVLFPAAAATPPGYMCKPCGIRYSSLSTLQAHQEHYCSKRRTKPDGTEAPADAAADESSGDSKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPVPPPTSNGEAVEGPPAQDRYCVDCDIHFTSVKTYRAHKAHYCNTRQVVKQVLAAARTGSATSGSAPPSPGATPPAQSQYALALPTNPILIVPYSILQSASRLPGATLPDPDTPCFLLPNGTLQPISRALPNINSELKEPEVLKSANRPREPSRDGATPLDLSVRRTPESVITDEHEKENRMRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPCVPSPPEEKFTPVVPPPIMPPALALRLATELPVTTASPQVLVKQGVSKCIECNIVFCKFENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQLYYCTKRETRSPRSLPEAPRPSSGSDGGWKCPCCDVVSPTAAAAQRHMESHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPADLQEESYISCVLEEDNRETTSPSPAVGDRVHRCGSCAYTSTYRGNVVRHARLVHATEDPEPEEQTSPIPPVDIKKEPETEEDTPNFCKSCNIPFKYVNTYKAHKQFYCTANQDTAANNNVPARVNDAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00214014;
80% Identity: -