Basic Information

Insect: Fabriciana adippe
Gene Symbol: -
Assembly: GCA_905404265.1
Location: FR990010.1:526613-531598[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.8e-08 7.1e-06 26.7 0.5 1 23 173 195 173 195 0.98

2 14 0.011 0.96 10.6 2.0 1 23 201 224 201 224 0.92

3 14 0.00023 0.021 15.8 2.0 1 23 230 252 230 252 0.98

4 14 0.00053 0.048 14.7 3.3 1 23 258 280 258 280 0.97

5 14 5.3e-06 0.00048 21.0 3.0 1 23 286 308 286 308 0.98

6 14 5e-07 4.5e-05 24.2 1.0 1 23 314 337 314 337 0.96

7 14 3.6e-07 3.3e-05 24.6 2.2 1 23 343 365 343 365 0.98

8 14 8.8e-06 0.0008 20.3 0.9 1 23 371 393 371 393 0.99

9 14 0.00028 0.025 15.6 1.0 1 23 399 421 399 421 0.98

10 14 8.8e-08 8e-06 26.5 0.8 1 23 427 449 427 449 0.98

11 14 5.6e-07 5.1e-05 24.0 1.4 1 23 455 477 455 477 0.98

12 14 0.057 5.2 8.3 3.0 1 23 483 502 483 502 0.95

13 14 7.2e-07 6.5e-05 23.7 0.8 1 23 508 530 508 530 0.98

14 14 0.00011 0.01 16.8 6.2 1 23 536 558 536 558 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.8e-08	7.1e-06	26.7	0.5	1	23	173	195	173	195	0.98
2	14	0.011	0.96	10.6	2.0	1	23	201	224	201	224	0.92
3	14	0.00023	0.021	15.8	2.0	1	23	230	252	230	252	0.98
4	14	0.00053	0.048	14.7	3.3	1	23	258	280	258	280	0.97
5	14	5.3e-06	0.00048	21.0	3.0	1	23	286	308	286	308	0.98
6	14	5e-07	4.5e-05	24.2	1.0	1	23	314	337	314	337	0.96
7	14	3.6e-07	3.3e-05	24.6	2.2	1	23	343	365	343	365	0.98
8	14	8.8e-06	0.0008	20.3	0.9	1	23	371	393	371	393	0.99
9	14	0.00028	0.025	15.6	1.0	1	23	399	421	399	421	0.98
10	14	8.8e-08	8e-06	26.5	0.8	1	23	427	449	427	449	0.98
11	14	5.6e-07	5.1e-05	24.0	1.4	1	23	455	477	455	477	0.98
12	14	0.057	5.2	8.3	3.0	1	23	483	502	483	502	0.95
13	14	7.2e-07	6.5e-05	23.7	0.8	1	23	508	530	508	530	0.98
14	14	0.00011	0.01	16.8	6.2	1	23	536	558	536	558	0.98

Sequence Information

Coding Sequence: ATGTCGGAATCGTTAAATTTAAACAATATTTGTCGATGTTGTCACACGGAGGGTTCTTTAAAACAACTAAATGATTCATATTTCCATAACGGACAGCAAAAAATCTATTCAGATATGTTGAATCAAACATTTAATTTAGAAATAAAACCAGATCCTGACTTATCATACTCTATATGTGAAATATGCATTCCAAGATTATGTGATGCATATCTCTTCCGTCATCAAATTTTATCATGCGAACAACTGTTTTATCAATACTATACACAATTAAAAGGAATAGAGATCAGTTACAAAGGTGTAAAAGATGAAGTTGAAGAAACACTAGAAGATTTTAAAAAAGAAACCTTTAATCAAGATCAAAATAGTTGTGACCTGAAATATGATAACGCTTCAATCAGTGATTCCGGAGATATTGATGATCAGCCCCTTTCAACTTTGAGGAGTCAATCGGAGCAGAATGACTGGATGTTGCCAAATATAGAAGACGCCAAAGTGACGAAAGTTAAAATAAAAAAGTTTAGCTGTAATGTATGCGATAAGAAATTTTCATATAACGGCTCGTTGGAAGTGCACATGCGAGTGCACACTGGGGAGAAAACCTACTTATGTCACATATGCAACAGCAAATATAGCCTGAATAAAGAACTAATAAAGCATATAACACTAAAACACAATCAAAACGGATCATTCCCCTGCACTTTTTGCACAAAAGTTTTTGAGAAGGCGAGATTTTTGAAAAATCATCTAACTACTCACTTTGGGGGTGAAAAATTCAAATGTATACACTGTGATAAAGAGTTTCAAAGAAAGAAAGGGTTGAAGGAACATTTGAAAATACACACTGGGGAGAGAAATTTCACATGTAACATATGTAGTAAGTCGTTCGGACATAACCAAACTTTGAAATCTCATATACTTACCCACACGGGTGAAAGGCCGTACGTTTGTGATGTTTGTGGACGGAGATTTCCTCAAAGAACACATTTGAAAAGACATATATATATAATACACACCGGTGTCAAACCGTATGTTTGTAAAATTTGTAATAAACAGTTTTCAAGCAAAAGTTATCTGTCGATACATCAAAGGCAACACACTGGGGAGCGACCGTACACTTGTGACGTTTGCAAGAAGGATTTCACAGCGTATACAACTCTAAAAGTCCACATGAGGGTACATACGGGATTAAAACCCTACATCTGTTCTTTTTGCGACCGCCAATTCGCTCAAATGGCCAGTTTTAAGTTACACGAACGGACGCACACTGGGGAGCGACCGTTTTCGTGTAAAGTGTGTAAAAAGGCGTTTTCCGATAATGGCTACTTGAAGATTCATATGCGGGTGCACACTGGGGAGAAACCGTTCAATTGTGAGATATGCAAGCGTTCGTTTAGAGAGACTGGGCAGTTAAAACGTCATATGCGTGTACACACGGGTGTTAAACCGTACACATGTAAAATATGTAATAAACAGATTGGGAATTTATCTAAACATATGCGTGTACATTCGGACGAGCGGCCATTTAATTGTAATATATGTAATAAACAGTTCTCCATTAATGGTAATCTAAAGTTGCATATGCGAGTGCACACTGGGGAGAGACCATTTAGTTGTGAAATATGTAATAGTCATTTTACTCAAAGTAGTGGTTTAAAACGACATAGATGTACCCATGGGAAGAGCGAATGA
Protein Sequence: MSESLNLNNICRCCHTEGSLKQLNDSYFHNGQQKIYSDMLNQTFNLEIKPDPDLSYSICEICIPRLCDAYLFRHQILSCEQLFYQYYTQLKGIEISYKGVKDEVEETLEDFKKETFNQDQNSCDLKYDNASISDSGDIDDQPLSTLRSQSEQNDWMLPNIEDAKVTKVKIKKFSCNVCDKKFSYNGSLEVHMRVHTGEKTYLCHICNSKYSLNKELIKHITLKHNQNGSFPCTFCTKVFEKARFLKNHLTTHFGGEKFKCIHCDKEFQRKKGLKEHLKIHTGERNFTCNICSKSFGHNQTLKSHILTHTGERPYVCDVCGRRFPQRTHLKRHIYIIHTGVKPYVCKICNKQFSSKSYLSIHQRQHTGERPYTCDVCKKDFTAYTTLKVHMRVHTGLKPYICSFCDRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFNCEICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSDERPFNCNICNKQFSINGNLKLHMRVHTGERPFSCEICNSHFTQSSGLKRHRCTHGKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00213773;
90% Identity: iTF_00160038;
80% Identity: -