Basic Information

Gene Symbol
nfxl1
Assembly
GCA_029955175.1
Location
JANEYG010000007.1:4178170-4183707[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3 3e+04 -8.4 5.6 15 19 169 173 168 173 0.81
2 15 0.3 3e+03 -0.9 0.4 4 10 204 210 203 210 0.95
3 15 7.2e-08 0.00072 20.2 17.0 1 19 218 235 218 235 0.99
4 15 4.8e-08 0.00048 20.8 17.8 1 19 271 289 271 289 0.99
5 15 1.8e-09 1.8e-05 25.3 12.0 1 18 324 341 324 342 0.97
6 15 2.6e-06 0.026 15.2 11.1 1 18 377 394 377 395 0.97
7 15 0.0021 21 6.0 13.2 1 17 429 445 429 445 0.99
8 15 1.6 1.6e+04 -3.3 1.1 5 10 485 490 485 490 0.94
9 15 0.00017 1.7 9.4 6.0 8 19 504 515 503 515 0.88
10 15 0.13 1.3e+03 0.2 6.3 4 12 527 535 525 535 0.89
11 15 3 3e+04 -5.8 3.5 14 18 564 568 564 569 0.85
12 15 0.12 1.2e+03 0.4 5.2 1 11 605 615 599 616 0.80
13 15 3 3e+04 -5.2 2.4 5 10 632 637 632 637 0.90
14 15 8.3e-06 0.083 13.6 17.9 3 19 646 662 645 662 0.94
15 15 2.6e-06 0.026 15.3 12.9 1 18 705 724 705 725 0.87

Sequence Information

Coding Sequence
ATGAACAGCAGTTATAAACCTTCCAACCCCTGGAACAAGAACGTCCagcaaaaaaagaagaaagttaTGAAAGTAAGCCCTCCCAGCGCCATAGAAAAACCTTCACCAACCCCTTCAGAAGTAAGATTCAAAGAAGCCCACTCTAAGTTACAAGCTGCTGTGAAGAAGCATGTGAAAGATTACGAGTCCTCTTCCGAGGAAGATGAACTAGAATCGAGCAATTTAATAGAGGATGTATTAAAGAATTATAAGAACACCGGAGTAGGAGATGACTACCTTGTTCGTACTCAAACATTCATCGAAGAAGCTTTCGTTTCAGGCGCAGCTACTTGTTTGATATGTATATCAAGAGTCAAGAGAGACGATGCGATTTGGAGTTGTCTGAGTTGCTACGCGTCGTTTCACCTGATGTGCATCCAGAGGTGGTCCAAGGATACGATAATTCACCAGAAACAGGCGTTGGAAGATCCCGTACCCAACCGACAGATTCGGTTGTGCTGGTGCTGTCCGAAATGCAGGTACGAATATAAACCTGAGGACGTTCCTAGCAAGTATATGTGTTTTTGCAAGAAGACTGAGAACCCCAAGTTCGAGCCATTCCTAGTGCCGCACTCCTGCGGGGAGATATGCAAGAAAGACTTGGTGCCCAGCTGCGGGCATAAATGCCTGCTTCTATGCCATCCAGGACCTTGTCCTCCCTGTCCGGTGACCGTAAGCGTGACTTGCTACTGTGGTTCGCAAGCACCCAAGGTGCAAAGGTGTAGCAAAAAAGAGTGGTCTTGTAACAACCCTTGTGGGAGAGCTTTGTTATGCGGTAAACATTCCTGTAGCGACCCCTGCCATCCGGGGGAGTGTAAACCCTGTCCGAAGAAGAGCATCCAGAAGTGTTTGTGTAAATCGCAACAAAAGCTGAGAGACTGTGCTTCTCCAATATGGCAATGTGATAAGGTTTGTGATAAGCTTTTGGAGTGCGGCAACCACAGATGCCAGGAGGTGTGTCATGCAGGTGATTGTGACGGTTGTGCCTTGAACAAACCGAGGACTTGTCCCTGTGGGAAAACGTCGTATCAGCTTCCTTGTACGGAAGAGACCCCGACTTGCTTGGACACTTGTGACAAGTTACTCGACTGTGGGATTCATAGGTGCAACCAGCGCTGTCACAAAAACAAATGTGGAGCATGTTTGGAAATAGTGGTGAAAAGCTGCAGGTGCGGCCAGCGCACTAAAGAAGTCCAGTGTTCCAAGCCTTACGTCTGCGAAGCAAAATGCAAAAACCTAAAAGACTGCGGCAAACATCCCTGCAATCGAAAGTGCTGTGACAACAACTGCCCCCCCGTGCGAGAAACTATGCGGCCAAATGCTGAACTGCAGGAATCACAAATGTGCTTCGGTCTATGCGGGGCTACTAAAATCGTAGTGCCCTGCGGAAGCAAACAGAAAACCAGTCCGCCCAAGTGCAGCAAACTCTGCTTAATACCACCTGACTGCCACCATGAAAAGCAAGTGGAGCACAAGTGTCACTTCGGAGACTGCCCCCCTTGTCGTCAGGTATGTAACAAGGCGAGACCGACGTGTCCACATAAATGCGTCGCCCCTTGTCACACCGCAGTGCTTGTAAAGGTCAAAGAAGCGCAAAAGGCATCCATGCCTTGGGAACAAACGCAGCCGCAAGTTGAAAAACAAGCGTTACCATGTCCTGATTGTGAGGTATTGGTGCCTGTAACCTGTTTAGGTGAACATGAAACAGCGGATTTTCCTTGTTACCTAGCGAAACCGTCCAGTTGTTACCGTCCATGTGGAAGGCTTCTCAAATGCGAAAACCACATCTGCATTTTGCCGTGCCACGTAGTGGAAGCAGCACCAGATAAATTAAAGGCTGGAGCAAATTGTGAGAAATGCGAACAAGAGTGCACCAAAGACAGACCGGAAGGGTGTCAACACTTTTGCCCTAAACCCTGTCATCCAGGCCCCTGCCCTCCTTGCAGTAATATGCTACGCATCAAATGCCACTGCGGTCTCAACCAGCCGTACGTACACTGCAGCGATTGGATTTGTGCGGATAAGAGAGAAGCACTGCAAAGCTGTGGAGACCGTTGTCCAAAGAATtatgaTTGTGGTCATCGATGTAAGGCCAACTGCCACCCAGGGCCGTGCCCTAACGCAGACGAGTGCAAGAAGAAAGTAAAAGTGAGCTGCAAGTGTAAGCGTATCAGGAAGGAGTTCGCTTGCGACGTCGTACGTAAAAACATGGCAAAGGTGGATTGCGATGATGAGTGTAAAATGAAATTGGAAGAAGAAAGGAAAATTAGAGAAGCTGTAGAACAGGAGAAGAAGCGGGAAGAGGAGCTGAGGAACAAGAAGGAACTGGAGAGGTACCAGAAGATTTTCGAGGGTAAAAAGAAGAGTAAGGCTAGGCGAGTGAACGAAGCGGAGGATGAGTTGGGGTTTTTTGAGAAGTACCGGCTGGTGTTGttgtgtatttttattgtagttGTTAGTGTAGggttttattatctttttgtTCTAGTCATTTGGAAAGGTAAGGTTAAAGAACAGAGCGGTACTGTAATTTTGTTACACGGTAGCAAAATGCCATATGCAGATTTATTGACTCCTGGTACGGAGCTTAAAGAGCTCAATTTTAATGGGTTCTGGGACTGGTTCCTCAACACATCCGACCTGAGACTCCACTGGAAATACGAACCAACGTACGTAATCGCCCAGTTTGCTTTCATATTCGGAGGACTAGCCACACTAGCCCATGCATGCATTAAACGTGGTCGCCTTCCATACCTATGGCTAGCGGTGGTGCTGCACGGCCTCGTCGTCGAAGGCATGTCCTACGCGCTCCGCCCCCACGTGGACAACTTCTGGCATTCGCAAACCCCCGTCATGTTTCTAGGAGGACGGTTACCTCTACACATAATATTCTTATATCCTTGCTTCCTGTACAACAGTTCCATCGCTGTGGCTAAAATGCGGCTGCCGAAATGGTCGGAGCCGTTCGCTGTAGGTTTAGGTGTCGTTTTGATAGATATCCCTTACGATATCATATCGGTAAATTTCCTGCACTGGACCTGGCACGATACGGATCCCAACATATTCGACAGGCACTACTGGGTACCTTGGAATTCGTACTATTTCCATGCCAGCTTCGCCGCTAGTTTCACTTTTTGGTTTCATTTCACCAGGGAGAAGCTGTGCCGGAGCGAGGGCAAGTGGATATCTGATAAACGCATATCTAGAGAATTGCTCTGTTCCCTAATCGCAGGATTACTAGGAACACCTGGAGGCGTCCTACTGTTTATACCCATCTACCATCCGTTACAcgacattttcaaattacacAGCGAAGTAACTTTCTTTatgttgttttcaattttcctaCTCTTGATTTGGTCGGGTGATAGAAAACCTAAGACGGAATTTCCTAACCAAGCTAAAGGAAAAACACACTGGACCACTTGGATACTTGTAACTCATCTAATATTACACTACGCCTCGTTTTTGATTATGCCTATATTTTTCAACCCGGAAGATGAAATTTCAACGGGTTTAAAAGAACCTATTGGTCCTTGTAACGAGTATGAAGACGTAAAAACAGCGTTTGGTATGACCCTACAAAAGCGTAAATATCTCTGTGCATCGGATTacgatgaaaaatatttcgatTGGCACTGTTTACCTGGCAGTAAACCTCCATCGAGTGGTTCGATTTGGTACACAGCTTGTGGAGTTGCGCTCCCAAACAGAGTAGAGTATATTTCGATAATAGCTTTACTTTGTATAATCTCTGCTACAGTGTTTAGTAACTTGCATTTCCATTCGTACGGAGATGGAGTTTTTACAGAAAAGTACAAGCAAATAAAGGATAATAAAAAGAGGAAttaa
Protein Sequence
MNSSYKPSNPWNKNVQQKKKKVMKVSPPSAIEKPSPTPSEVRFKEAHSKLQAAVKKHVKDYESSSEEDELESSNLIEDVLKNYKNTGVGDDYLVRTQTFIEEAFVSGAATCLICISRVKRDDAIWSCLSCYASFHLMCIQRWSKDTIIHQKQALEDPVPNRQIRLCWCCPKCRYEYKPEDVPSKYMCFCKKTENPKFEPFLVPHSCGEICKKDLVPSCGHKCLLLCHPGPCPPCPVTVSVTCYCGSQAPKVQRCSKKEWSCNNPCGRALLCGKHSCSDPCHPGECKPCPKKSIQKCLCKSQQKLRDCASPIWQCDKVCDKLLECGNHRCQEVCHAGDCDGCALNKPRTCPCGKTSYQLPCTEETPTCLDTCDKLLDCGIHRCNQRCHKNKCGACLEIVVKSCRCGQRTKEVQCSKPYVCEAKCKNLKDCGKHPCNRKCCDNNCPPVRETMRPNAELQESQMCFGLCGATKIVVPCGSKQKTSPPKCSKLCLIPPDCHHEKQVEHKCHFGDCPPCRQVCNKARPTCPHKCVAPCHTAVLVKVKEAQKASMPWEQTQPQVEKQALPCPDCEVLVPVTCLGEHETADFPCYLAKPSSCYRPCGRLLKCENHICILPCHVVEAAPDKLKAGANCEKCEQECTKDRPEGCQHFCPKPCHPGPCPPCSNMLRIKCHCGLNQPYVHCSDWICADKREALQSCGDRCPKNYDCGHRCKANCHPGPCPNADECKKKVKVSCKCKRIRKEFACDVVRKNMAKVDCDDECKMKLEEERKIREAVEQEKKREEELRNKKELERYQKIFEGKKKSKARRVNEAEDELGFFEKYRLVLLCIFIVVVSVGFYYLFVLVIWKGKVKEQSGTVILLHGSKMPYADLLTPGTELKELNFNGFWDWFLNTSDLRLHWKYEPTYVIAQFAFIFGGLATLAHACIKRGRLPYLWLAVVLHGLVVEGMSYALRPHVDNFWHSQTPVMFLGGRLPLHIIFLYPCFLYNSSIAVAKMRLPKWSEPFAVGLGVVLIDIPYDIISVNFLHWTWHDTDPNIFDRHYWVPWNSYYFHASFAASFTFWFHFTREKLCRSEGKWISDKRISRELLCSLIAGLLGTPGGVLLFIPIYHPLHDIFKLHSEVTFFMLFSIFLLLIWSGDRKPKTEFPNQAKGKTHWTTWILVTHLILHYASFLIMPIFFNPEDEISTGLKEPIGPCNEYEDVKTAFGMTLQKRKYLCASDYDEKYFDWHCLPGSKPPSSGSIWYTACGVALPNRVEYISIIALLCIISATVFSNLHFHSYGDGVFTEKYKQIKDNKKRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-