Basic Information

Gene Symbol
stc
Assembly
GCA_029955175.1
Location
JANEYG010000013.1:1717086-1720812[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 3 3e+04 -4.4 2.9 6 10 409 413 405 413 0.55
2 14 1.4 1.4e+04 -3.0 0.3 4 10 439 445 439 445 0.90
3 14 1.3e-05 0.13 13.1 13.5 3 18 453 468 452 469 0.93
4 14 3.1e-09 3.1e-05 24.6 14.9 1 19 505 523 505 523 0.97
5 14 3e-10 3e-06 27.9 15.6 1 18 563 580 563 581 0.98
6 14 5.6e-06 0.056 14.2 14.6 4 19 628 643 621 643 0.87
7 14 2.1 2.1e+04 -3.6 2.0 5 10 672 677 672 677 0.93
8 14 0.007 70 4.3 9.3 1 11 683 693 683 694 0.96
9 14 2.3 2.3e+04 -3.7 0.8 4 10 698 704 697 704 0.69
10 14 3e-10 3e-06 27.8 14.5 1 18 710 727 710 728 0.98
11 14 2.6 2.6e+04 -3.9 0.7 6 10 757 761 756 761 0.84
12 14 0.00025 2.5 8.9 12.8 1 19 767 784 767 784 0.91
13 14 1.3e-08 0.00013 22.6 15.7 1 19 820 839 820 839 0.97
14 14 0.027 2.7e+02 2.4 17.2 1 18 849 867 849 868 0.92

Sequence Information

Coding Sequence
ATGTCATTTTATAACAGTCATAcgaattatttacaatttaattcaagtttgGAAACGCATAACCAGAGTATTGCTGCAAGTGGTTCTGAATTATCACGCACACCACGTCCGTCTAATCAAATGGATATACAATATTCAGAATTACAACCTACTGCTCAAGAATTTCGGCCTTTAAGTGATGCAACAGGATTTACAAGTAGTGGAGCTATTAAGAAGGTGCCTCAAAATGAGAAGAATCAATATAAGAATACAGGAAAAAGTAGACGGAACTGTTATGGAAGCGGGAGAACGTTTATTGGGTCAAAACGTGAATGTTCTAATGGAAATGagggattttataaaaaccaacaaaataCCTTACAAGATACATCAGTCGATATGTCGAATCAAAAACCATCCACACAAAGTGTTTCCCTAAATTCTGGCAATTATGATTCTTGTGAGTTTCCATCcgagagaaaaaatttaaatcaaaagcCTGTGTATTATGGAAGAAGTCAGGACACACCTAGTAAACAGTATGGAAATAggaataaatataaagaaaacagaaatgtAGCCCATCCGACTAGTTTCGACGATACCcgttattatgaaaattccAGTGGCAATTTTAAGACTGGTGGTAAAGCATATGGAAAACCTTACAAAACTGGTATTCAGAATAGACATGAAAAGAGTAATCACTATGAAAAATATGTCAATAGGAATAGTACTTACGATAAATATGGGGATAAATATAATCGAAGCAGTATGTTTTCTGATAATTTAGGTGGAGGTCTTAGCAGTAATACCGATTATTTCGATAAAAATAGTGATTATTCTGTAGAAAGGAATACTGGACAATTTGAAAACGGAAAGTTCAAGGTGCAAAGAAATGATTATAGTGTTAACGAATTCCAAACTGGTTTTAAACCACATGTTAACAAAAGTAGTCAATACGTAGATGGAAAAACCAAAAGGGATTGGAAATCAACAGCCAGTTTCAAACATTCCAAGAATTCAGCTGCCaagtataagaaaaaaaTGGATGCTGCTTCTCAGAGAGAGAGATTGGaagaaatgataaaaaatcGCCTTCTCGAGTGTCTTGTTTGCTGTGAAAAAATAAGGCACACTGATAGAGTCTGGAGTTGTACTCAGTGCTATCATATTTTGCATTTACTCTGTGTTGCTGCTTGGGCAAAATCATCCAAGATGGAAAATGGATGGCGATGCCCAGCTTGTCAAAACTTGTGCAGCGAAGTGCCAAAATGTTATAAATGCTACTGTGGCAAAACGGTCGACCCCAAGTACGAACCAGGAATTATTCCTCACGGATGTGGAGAAATTTGTTTGAGAAAAGGACGGATCTGTGAGCACAAATGCACGATTCTTTGCCATCCAGGTCCATGTCCTGACTGTGATGTTATGGTGGCGAGGTCATGTGGATGTGGGGCCACACAACAAACTGTAAAATGTTGTACTGATATAGAGTTAGTCTGCAATTCCATTTGTAATAAAACCTTAAACTGTGGTATTCATAAATGCAAATCTACATGTCATCCGGGAAACTGTAATCCTTGCACTGAAACTATTATACAGGAATGTTACTGTGGCAAACAGGGTAGAAAGGTTACATGCTCTGTCGAATTCTCTGGGAAGACCCAATACATTTGTGAGGATACGTGTGGGAAAACTTTATCTTGTGGAAATCATAAATGCGAGAAAACATGCCACGAAGGCCCTTGTGAACCTTGTGCTAGAGATGTTAATCTTGTCGATACTTGTCCCTGTGGAAAAACTCCTTTggagaaaataagaaattcgTGTTTGGACCCCATTCCTTGCTGTGATAAGatttgTGGAAGAGTGCTCAAATGTGGACAGCCAAGTTTACCTCATAAATGTAGAGAGAAGTGTCACGAGGGAGAGTGTCCCAAATGTCCTTTGACTACTGTAGTAAGATGCCGTTGTGGTCACATGGACAAGGAGTTGCCTTGCCAGAAATTAACCACTAAAGCGGACGATGCAAGATGTGAGAAAAAATGCACAAAGAAACGGACATGCGGCAAACACAAATGCAATCAGCGTTGTTGTATAGAGATTGAACATTTTTGCCCACTTCCTTGCAACCATCAGCTATCATGTGGCCAACACAGATGTGAAAGAACTTGCCACTCTGGTCGTTGCCCACCTTGTATGGAAACTAGTTTCGAGGAGTTGTACTGTGAATGTGgagcaagtgttttatttCCACCGGTTCCATGCGGCACCAAGCCACCTGCATGTAGCAAGCCTTGCTCTAGGCAGCGACCATGTGGACATAATGTAAATCATATGTGCCACACCGGTCCCTGCCCTCCTTGTACTGTTCTTTGCAAGAGATCATGCTATGGCAACCATGAACAGCGCTCGGCTATTCCTTGTCACCAAGAAAGCTTCAGTTGTGGTTTACCATGTGGTAAGCCAATGCCTTGTGGGAGACACAAATGCAATAAACCTTGTCATGAAGGTAAATGTCCTTTACCTTGTAAACAACCTTGTAATATCGAAAGGGCATTGTGTGGACATCCTTGCGGTAGGCCATGTCATGATCCTCCATGTCCTGAAAGTAGTTGCAAACAGAACGTCCCAGTTACTTGTTTATGTGGCCTTCAGAAAAGTACCAGGCCTTGCTTAGAGGTATCGGAGGAATTTAGGAATATTGAAATGGCCaagttaaaagataaaattggAGATATATCTAAGGATCAAACAGTAGATATTTCTGATATCTGTAAGGCGAAGAAACCAACAGTGCTGAAAATATTGGAGTGTACTGAAGAGTGTCGTGTTCTGGAAAGAAATATAAGGCTTGCTATTGGGCTGCAGATTCGCAATCCGGATCTAACTCAGAAATTGACGCCTAAATATACAGATTTTATGAGACAATGGGCTAAAAGAGATCCCCATTTCTGTCAAAAGGTTCACGATAAATTAACGGAATTAGTTCAATTAGCAAAgcaaagtaaacaaaaaagtCGCTCTTACTCATTTGAATCCATGAACCGGGATAAGAGACACTTTATCCATGAGTATTGTGAACATTTTGGCGTAGAAAGTGCCGCATACGACACAGAACCAAATCGGAATATTGTAGCCACAGCTATTAAAGATAAGTCTTGGCTTCCGAGCATGAGTTTATTGGAAGTAATTCAGAGAGAAAATGGGCAAAGGAAAGTTCCTGGACCTTCTGTCCTTGGAAAAAATACAGCAAGCAAGCCAGAAATTGTGTCTTTACGACTACCATCGCAGATACAAAGgccaaataaaaattgtggCGAGTTCGCGGACTATTTTGATCCACCACCATAG
Protein Sequence
MSFYNSHTNYLQFNSSLETHNQSIAASGSELSRTPRPSNQMDIQYSELQPTAQEFRPLSDATGFTSSGAIKKVPQNEKNQYKNTGKSRRNCYGSGRTFIGSKRECSNGNEGFYKNQQNTLQDTSVDMSNQKPSTQSVSLNSGNYDSCEFPSERKNLNQKPVYYGRSQDTPSKQYGNRNKYKENRNVAHPTSFDDTRYYENSSGNFKTGGKAYGKPYKTGIQNRHEKSNHYEKYVNRNSTYDKYGDKYNRSSMFSDNLGGGLSSNTDYFDKNSDYSVERNTGQFENGKFKVQRNDYSVNEFQTGFKPHVNKSSQYVDGKTKRDWKSTASFKHSKNSAAKYKKKMDAASQRERLEEMIKNRLLECLVCCEKIRHTDRVWSCTQCYHILHLLCVAAWAKSSKMENGWRCPACQNLCSEVPKCYKCYCGKTVDPKYEPGIIPHGCGEICLRKGRICEHKCTILCHPGPCPDCDVMVARSCGCGATQQTVKCCTDIELVCNSICNKTLNCGIHKCKSTCHPGNCNPCTETIIQECYCGKQGRKVTCSVEFSGKTQYICEDTCGKTLSCGNHKCEKTCHEGPCEPCARDVNLVDTCPCGKTPLEKIRNSCLDPIPCCDKICGRVLKCGQPSLPHKCREKCHEGECPKCPLTTVVRCRCGHMDKELPCQKLTTKADDARCEKKCTKKRTCGKHKCNQRCCIEIEHFCPLPCNHQLSCGQHRCERTCHSGRCPPCMETSFEELYCECGASVLFPPVPCGTKPPACSKPCSRQRPCGHNVNHMCHTGPCPPCTVLCKRSCYGNHEQRSAIPCHQESFSCGLPCGKPMPCGRHKCNKPCHEGKCPLPCKQPCNIERALCGHPCGRPCHDPPCPESSCKQNVPVTCLCGLQKSTRPCLEVSEEFRNIEMAKLKDKIGDISKDQTVDISDICKAKKPTVLKILECTEECRVLERNIRLAIGLQIRNPDLTQKLTPKYTDFMRQWAKRDPHFCQKVHDKLTELVQLAKQSKQKSRSYSFESMNRDKRHFIHEYCEHFGVESAAYDTEPNRNIVATAIKDKSWLPSMSLLEVIQRENGQRKVPGPSVLGKNTASKPEIVSLRLPSQIQRPNKNCGEFADYFDPPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-