Eads013606.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000046.1:401741-406406[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.36 24 6.3 0.2 2 23 313 335 312 335 0.88 2 15 2.7e-05 0.0018 19.3 0.1 1 23 394 417 394 417 0.97 3 15 0.41 28 6.1 0.6 1 21 423 443 423 444 0.92 4 15 0.00095 0.065 14.4 4.6 1 23 518 541 518 541 0.96 5 15 0.028 1.9 9.8 2.1 2 23 548 570 547 570 0.95 6 15 0.0012 0.083 14.1 3.3 1 21 685 705 685 706 0.95 7 15 0.01 0.7 11.2 1.0 2 23 718 740 717 740 0.92 8 15 0.28 19 6.7 2.3 1 23 743 765 743 766 0.95 9 15 0.021 1.4 10.2 0.4 3 23 773 793 771 793 0.96 10 15 3.7 2.5e+02 3.1 0.2 1 23 797 820 797 820 0.95 11 15 4.9 3.4e+02 2.7 0.4 2 23 827 849 826 849 0.89 12 15 0.07 4.8 8.5 0.5 2 23 858 880 857 880 0.94 13 15 1.8 1.2e+02 4.1 0.4 3 19 887 903 886 904 0.97 14 15 1.5 1.1e+02 4.3 0.5 2 23 1111 1133 1110 1133 0.92 15 15 0.77 53 5.3 0.9 1 23 1146 1168 1146 1168 0.95
Sequence Information
- Coding Sequence
- ATGGAGACAAAATTGTGTAGAATATGCGCCAATTTTGGACAGAACtttgtacatattttcaaaactgAAGGATTAAGAGATAAAATAGAAACATGTTTACCCATAGTTGTATCCCCTTATTGTCTTCTACCGGATACTATATGCGGGGAATGTACAGAAACCATAGACAGTTTTTATGGTTTCATGAAGAAATGTTTACAGAGTATAATAGTTTTAGAAGCACAGTATGACATTCATGAATCTTGCCTAAAATCCAAAAGGAAAAAAGATAAGGGCTGTTTTGTAGACTTTGCACACGAGAGAAGTAACATGGGCGTTCAGACTGAAGACTGCATGGATGTTTTAATTGGACGGGACGCGGATTTGAAAGAATACAGCTCGAATTTCCCTTTGATAACGAAATTTTTAGATACAGCTGATATGTCTAAGCTGAAACCTGTTCCAAGTTTAGTGGATTACGATATAGATTCAGATTCCAATGTAGATGATAATGATCTCGATACTGGTAATGTCGTTCTTGGAGATAAATTGGAAACACTAACCAAAATTACTAATTTCGTCGATTCGTTTCTATCTCAGAAAAGTCTTTTTATGTCCAGGCGATACAACCTGGATAACGCCGACAATGATTTGATCTCTGAAATAACTCATAGGAAGAGCTTAAAGCGTAAATGTGATACAATCGAAAATAGCCgtaccaaaatatttaaaatggaCTCTTGGAATAGAAGGAAAAACaaacaaccaaaaaaatttgaagtacAAATGTCTGGATTTGGGgataatttttatagtttagaCGCGTTCGCTCCTATTTATCAAAACGATAAAAGCCTGGTAAATGGTTTCGAGAAGACTGATTCTCCAAACAGTGACACGGACAATCAACCAAATGCATTAACTCGGagtGAAAATTTGTTGTCGTCCCTTCCCCAGAGTTGTTTACTGTGTGATACTCACTTCTCTGGTGCAGCTGCTTTAGCTACACACGTATTTGAGACACACGGGATAGATATGACGGAAGTGGTTTCATCTGGATCTGGAGAATCCTTCCCGGAGaagaataaaaagaaaataccgAACCTTGTAAAGATTTCAGATCTTAGAAGGAGTGATTCATTGGATGAGAATCAGTTACCCGATCAGCAGCTTGAGGGGCCGCCGATGCTTCTTCCTAGTTTCGTATGCCCTAACTGCCCTGCTGTTTTTACCACTAAACCGGATTTAATGATGCATCTACGTGTGAAACACGCCGAGCAAGCAGCGTACCTCTGCGGGCTTTGCTTGCAACAGTGCACCACGTATGTGAACTTAAAAAGCCATATACAGGTGTGCTCGCAGCAACATTCTGTTAGCACCAGGTACACGTGTCAGGTATGTAAGAAACAGTCGAAGATGTTCGATCCGGCCGATTACATTGATACGAATGAGAATTTTGAGAATGGTGCTGTATCCCCCGGTTCTAAAAGCTTGTACTGTGGTGAGTGTGGTTTAAGCGACTTTTGTTCGTTTAAAGATTTTAGTTCGCATAGGCGTAACCAGCATTCTATATTCCATTGCGACCTTTGTAACAAGTTTTACGGCCGCAATTCTCACTTGTGGAAGCACGTTAATAGACTCCACAAGGGGCATCCTAGCATCACTTGTCAGTTGTGTTACAAGACGTCCGCGTCTAAATACCACCTTGCTCAGCACttcaataaaatacatttaaataaaggCATTAAGCAGAAGAGTGTTGACAGTGTTCAAATGGAAAAGGAGGAGTTTATGGCGCAGAAATTCCAAGGTTTCGATTTCCAGTCGGTAAAGCAGAGCTTTATGAAACAGGAAATGGATCAGGAGCGTAAGAATAGTGTTAGTGAAGTAGAAGAAGACTCGAACCAGTTAACGGACCAGGATGATAATTTGGATTATGCAGAAGGAGGTTTTAAACAAGATTTTCATATTAAAGAGGAAATGGAAATTGCTGCGCCAAAAGAAATCGATTCGTCTCACAACCTCtacaataacataataacGAATTATACACCTCCGCTTAACGAAGGGGATTACAAGTGCCCCAAATGTTCGAAAGCTTTCCATAAAAAAGTATTACTTAAGAAGCACAAGAAGAACTGTAGGCCTAAGTTGCAGAAGGATTTGTTAACGCGTTGTAAAACTTGTGCAAGAATATTCAAAGACCGTCAAAGCCTTGCAAAGCATTTGGTGAATTACCATTCGGAATACGTTTGCGAGATTTGTAACGAAAAAGTCCAGAGTAAGTGCGAGATTGTGTCTCATATAAGGTTCCATCACCCGGGTtgtcatttattttgtaaaatctgcAGTAACATACTGCGCAGTAAAGAAGACCTGCAGATACATTTACGCGACCATTTAGATTCGTACGTTTGCCAGTTCTGCGCCGACTCGTTGCccagtaaaataaaactgaagaTGCACATCCTCAGCTTACACAGGAAAATACTAAGCCTGTCTTGCGGTATATGCTTAAAGCTGTTCGAAACTCAACACATCCTCAAAGATCACGTAACTCTGGTTCACAAAGATCAACTTACCCCGCTGACTTCTTGTCCGGTGTGCGGGAAGAACTACGGATCCAAATGGAAGACGTACGACCACTTGAATAAGTCGCACGGTAGGATCTTTAGGGCTTGTAAAACTTGTTTGGAGGTTTTCGATAACGATGCTCAGCTACAAGCGCACTGTGATGTCACTTCCCATGGCGGACAAGGAGGTAGTAGCACAGGCATAAACACTACGGCTATCAGAAACAGTATTATGGCTCATATAACTTCCGCTATAAATGAAGTCGCTTCGAAAAACGAGTTGAACATCGACAATGAGGACGAAGAGGGTAGCGATACGGGTGAAGATGACGATAATAGTAGTAGCGATGAATACGAAAATGATATTGAGGAGTCGAAGGAAGATTTGTCTGTTGAAGCTGTAACACCGTTACAAGAATCTAGGATTTCTTTGTTGGAGAAACGACTGTTGGCTAAGAAAATAGGAGACGAAGACGAAGCAGTAACAAAACCTAGAAACCAGAGTACGATAAATAGAACAGAGGAAACTAGGCAGAAACCTGTTGGTGACGTTAGGAAACGAAACCAAGCCGATACACCTTCTttagtgaatatcaaaaaagaAGACGAAGCTGAATTATTGAATTCCCCATCCAACCCTCAAGTGAATTCATCGAAACGAACAGTGTACGTCAACAGCAACGACCCTTCCCACTGCGAGATATGCTTTAAGACTTGGCCGGCGAAAAAGCACTTGTGGCAGCATTACATACGTTGCCATAAAAGCGTAGCGGCTACAGTTTGTGGCATCTGTTTGAAAACCAACGAGAATTACAGGACCTTGCAGACGCATCTTCGCGAAAACCACCCGACTCTCCTGCACGGTCAAGGATTCGGGTCCAATTTCATATGCAGGATTTGCGGACGGTACCACAACGCCAGCTCCAAGCTACGCCTACACATGGTGATACACGAAAACTTCGATTGGAGTATAATAAGCGAACCACCCAAACCTTTGAAACAAGAAAGCGAAAAGAATACCGGTACGAACGGTTTCAGGGAAATCAAAGAAGAGCAACCGAATAACAGTATTGGATTGTACGACGAGAACAACCAGTACATTAACTACGACAGTCTCATCGAACAAGTGGAGTGTTCGTCCCAATCGGAGAACGAATCTGAAAATGAACAATCCCCGAGTAGTGCTAAAGGAGAGCAAGCATCTTCTTCGGACGAAGAAGACGAGGATGAGGAAAGCGATGAATCTCAGAATTCCATGCAAGCTCAGATGCTGAAGAACATGTTAAACGAAAAGAATAACGTGAATACAAAAGACGGTAAAGCGATTTATATATCTTCAACCGAGGATTCCAGTTCTAGTTTCAGCGATGGGAACAACGATGGATCCAAAAGTGACAGTTCCGATGACGAAGAGGGCTCCCGAGGATCTCAATCTCTGTCTTCGCAGAGCAAATTTAACGCCCGCTCCAATTCCAATACCGTTGATTCCGTGCTGAATGAAGCGAACCTGTTCAAGCCTAAGCCCGACGAACTGGATTCCGCTATTAAATCTATTAGTTACGAGTGCGCGCAACCGGAGGATGTAAAAGTCGAGGATGATTACTGCGAAATGCATAATAATGGTATTAATGAGAACGAGATTGAGTCAGCTGTGGGTAGTATTCTCTAA
- Protein Sequence
- METKLCRICANFGQNFVHIFKTEGLRDKIETCLPIVVSPYCLLPDTICGECTETIDSFYGFMKKCLQSIIVLEAQYDIHESCLKSKRKKDKGCFVDFAHERSNMGVQTEDCMDVLIGRDADLKEYSSNFPLITKFLDTADMSKLKPVPSLVDYDIDSDSNVDDNDLDTGNVVLGDKLETLTKITNFVDSFLSQKSLFMSRRYNLDNADNDLISEITHRKSLKRKCDTIENSRTKIFKMDSWNRRKNKQPKKFEVQMSGFGDNFYSLDAFAPIYQNDKSLVNGFEKTDSPNSDTDNQPNALTRSENLLSSLPQSCLLCDTHFSGAAALATHVFETHGIDMTEVVSSGSGESFPEKNKKKIPNLVKISDLRRSDSLDENQLPDQQLEGPPMLLPSFVCPNCPAVFTTKPDLMMHLRVKHAEQAAYLCGLCLQQCTTYVNLKSHIQVCSQQHSVSTRYTCQVCKKQSKMFDPADYIDTNENFENGAVSPGSKSLYCGECGLSDFCSFKDFSSHRRNQHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLAQHFNKIHLNKGIKQKSVDSVQMEKEEFMAQKFQGFDFQSVKQSFMKQEMDQERKNSVSEVEEDSNQLTDQDDNLDYAEGGFKQDFHIKEEMEIAAPKEIDSSHNLYNNIITNYTPPLNEGDYKCPKCSKAFHKKVLLKKHKKNCRPKLQKDLLTRCKTCARIFKDRQSLAKHLVNYHSEYVCEICNEKVQSKCEIVSHIRFHHPGCHLFCKICSNILRSKEDLQIHLRDHLDSYVCQFCADSLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHILKDHVTLVHKDQLTPLTSCPVCGKNYGSKWKTYDHLNKSHGRIFRACKTCLEVFDNDAQLQAHCDVTSHGGQGGSSTGINTTAIRNSIMAHITSAINEVASKNELNIDNEDEEGSDTGEDDDNSSSDEYENDIEESKEDLSVEAVTPLQESRISLLEKRLLAKKIGDEDEAVTKPRNQSTINRTEETRQKPVGDVRKRNQADTPSLVNIKKEDEAELLNSPSNPQVNSSKRTVYVNSNDPSHCEICFKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNENYRTLQTHLRENHPTLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWSIISEPPKPLKQESEKNTGTNGFREIKEEQPNNSIGLYDENNQYINYDSLIEQVECSSQSENESENEQSPSSAKGEQASSSDEEDEDEESDESQNSMQAQMLKNMLNEKNNVNTKDGKAIYISSTEDSSSSFSDGNNDGSKSDSSDDEEGSRGSQSLSSQSKFNARSNSNTVDSVLNEANLFKPKPDELDSAIKSISYECAQPEDVKVEDDYCEMHNNGINENEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -