Eads017928.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000089.1:417954-419724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3 1.6e+02 3.8 0.3 1 16 161 176 161 184 0.86 2 13 0.0019 0.13 13.5 2.0 1 23 193 215 193 215 0.97 3 13 0.53 36 5.8 4.1 2 23 225 247 224 247 0.92 4 13 0.019 1.3 10.4 5.2 1 20 256 275 256 279 0.90 5 13 0.0016 0.11 13.7 1.0 1 23 287 310 287 310 0.98 6 13 0.0024 0.17 13.2 1.1 3 23 321 341 319 341 0.96 7 13 0.011 0.75 11.1 1.5 1 23 350 372 350 372 0.97 8 13 0.24 16 6.9 7.0 2 23 382 403 381 403 0.92 9 13 0.0013 0.092 14.0 1.1 1 23 412 435 412 435 0.91 10 13 5.9 4e+02 2.5 4.1 1 23 444 466 444 466 0.97 11 13 0.21 14 7.1 1.7 2 23 476 498 475 498 0.93 12 13 7.7e-06 0.00053 21.0 2.9 1 23 507 530 507 530 0.98 13 13 0.045 3 9.2 4.1 1 23 539 561 539 561 0.96
Sequence Information
- Coding Sequence
- ATGGAGCATCACATTGGATCTTTTAAGGCAGAGAAACTTGACCTTATTGGTAACACCCATCATTCCAACAATGCTATTACCTCAGTTAAAGTAGGAGACGACGGTGAATCATCGACCACTGGCAAAATCATTAATAAGACGGAAGACGGTTCAGCATTCAATAGTAGTATTAAAGTAGAACAATCTGAATCTAGTCTAGATTATCTGGTGCAAACAGAGAACGAAGAATTAATTTGTGACGATGTAAAGACGGATCAACCTGATTTGTGGTTCATCAAGGAAGAGCAATATGTACCAGAACAAGATACGTGCTGCGTTAGAACCGAAAAAACGCACTACAATGATTGCTGTCAGTTTAAGGGTTACCGAGAAGATGTAAAGCAAGCTGAGCTATTCAGTCGTAGTGTAAATACCGCCACGCCCGGTGACCCACATCGGTCATCTGTGGTTCAAAAAAACCAGTCGCCACAAGTAAACTGGTTCACATGCGACTTGTGCGACCATAAGACCAAAGGTAGAGGCAATTTCATCATGAGGCACTTGGTGGTGCACAAAGACCCCGCCGAAGCcgaatggttcaaatgcaGTCTATGCGACTTTacgacaaaacaaaaatacagtTTGAAGCCTCACATGTTGCTCCATAAAGATCCCTCGGAAATAAAATGGATGCAGTGCGATCTGTGCAGTTACAAGTCGCACCGGAAACATTCTTTGAAATCTCACGTGACGTTGGTTCATATGAATGCGTCGGAAGTACAGTGGTTCCAGTGCGATTTATGTGATTTCAAGACCAAGCGGAAAAGCTATTTGCGTACTCACTTCGTCCACAAACACGCTTCAGAAGACGCAGTGTGGTTCAAGTGCGATGAGTGTAAGTTTAAGGCTAAACGCAAAGACGTTTTGAAGGTGCATATTCAGAGAGTCCACAGTGATCCGTCGCAAATACAATGGTTCGGTTGTTACTCGTGCGATTTCAAGTCGAAAAACAAAGGAAATTTACGCCAGCATATGCTGGTCCACATGGATCCTTCTGCGATAAAATGGTTCGAGTGCCGGGTTTGCAATTTCAAGGCTAAATACAAACAGAATCTAAATACTCACTTGTTGCTGCATAAGGATCCTTCGGAGATCGTATGGTTGAAATGTGATTCGTGCGATTTTAAATCAAAGCATCGAAGCCACCTGACGAAGCATAAGTTTGACCATAAAGATCCCTCGGAGGTGGATTGGTTCCAATGCGATTCATGCACTTATAAGACAAATAGGAATAGTTCCTTGAAACGGCATGTCGTGTTGGTACATACAGATCCTTCGGAAATCGAGTGGTTTACTTGCGAGTTATGTAGATTTAAATCTAAGCATAAAACCAGGTGGCTGGCTCATACTTCGTCTCACAAAAATCCACCACAAATAAAACAGCTGGAATGTAATACCTGTGATTTCAAAGCCGACACAAAGTGTGATTTGTGGAAGCATTTTTTGTCGGAACATAAAGCTGCGTCGCAAGTGAAATGGTTCCAGTGTGATTTATGCGGGTTCAAGTCGAAGCACAAATCCAACTTGAAGGTGCACATCCGCAGAATCCACACGGATCCGTCAAAGGTGGAATGGTTCGAATGTGATCAGTGCGATTTCAAGGCGAGGCATAAATGTAATTTGAAGAGTCACGGTTTGGTGCATAAGGATGACTCGGAGGTTCGATTGTGA
- Protein Sequence
- MEHHIGSFKAEKLDLIGNTHHSNNAITSVKVGDDGESSTTGKIINKTEDGSAFNSSIKVEQSESSLDYLVQTENEELICDDVKTDQPDLWFIKEEQYVPEQDTCCVRTEKTHYNDCCQFKGYREDVKQAELFSRSVNTATPGDPHRSSVVQKNQSPQVNWFTCDLCDHKTKGRGNFIMRHLVVHKDPAEAEWFKCSLCDFTTKQKYSLKPHMLLHKDPSEIKWMQCDLCSYKSHRKHSLKSHVTLVHMNASEVQWFQCDLCDFKTKRKSYLRTHFVHKHASEDAVWFKCDECKFKAKRKDVLKVHIQRVHSDPSQIQWFGCYSCDFKSKNKGNLRQHMLVHMDPSAIKWFECRVCNFKAKYKQNLNTHLLLHKDPSEIVWLKCDSCDFKSKHRSHLTKHKFDHKDPSEVDWFQCDSCTYKTNRNSSLKRHVVLVHTDPSEIEWFTCELCRFKSKHKTRWLAHTSSHKNPPQIKQLECNTCDFKADTKCDLWKHFLSEHKAASQVKWFQCDLCGFKSKHKSNLKVHIRRIHTDPSKVEWFECDQCDFKARHKCNLKSHGLVHKDDSEVRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -