Eads023423.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Exocentrus adspersus
Gene Symbol
ush
Assembly
GCA_029955175.1
Location
JANEYG010000228.1:75529-79848[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0065 0.44 11.8 1.6 1 20 166 185 166 191 0.94
2 9 0.00014 0.0092 17.1 1.4 1 23 232 254 232 254 0.99
3 9 0.0048 0.33 12.2 1.7 2 20 282 300 282 302 0.93
4 9 0.0057 0.39 12.0 2.7 2 21 591 610 590 611 0.94
5 9 0.0071 0.49 11.7 0.0 3 20 651 668 649 670 0.91
6 9 0.27 18 6.7 0.2 2 23 706 727 705 727 0.95
7 9 0.0056 0.38 12.0 1.4 1 23 733 755 733 755 0.99
8 9 0.011 0.76 11.1 1.8 1 23 811 834 811 834 0.95
9 9 0.18 12 7.3 1.2 2 21 916 935 915 936 0.92

Sequence Information

Coding Sequence
ATGTACAATAGAGTCGAGTATTCGAAGAGCGAAGAAAGAGGCAGCCAGGCGTTTTGTTCGGACGTAATGCGTGTTGGTACTGTTGGAGAGGTGGAAGATTGGACCAGCGATCCTGCGGACACCACTACCTCGGATGGTCCCGCTCCATGTTCTCCGACGAAAAGTAACACTCCCGACCAGACCATTGTCGCCGAAGAAAACGAAAAAGACAACCCTAAGACTGAGCCGGAGAAGACGCCTCGTATTagattaaaaacaaatctgGCCACTGATCCAGCGCTCCACCCTCACCCGCCAGCAACGCCATCGTTGAGTAACCTGAAGACGGAAATAGAAGCGAGTCAATCTCCGAGCGAATACTTGGCTGTCTTACCTCCTGCCATACAATCGGCTCTTGTATCTCGAGGTTTTTTCTTACCCAATCTGATTCCTGGACCTGAAGTTGTGCCGCGACAAGCAGATTGCGTTGAATCCAGACAACCATCTGTTCCGATTTTTCAATGTTCACCATGCGGCATCCGGTTTTCGTCTCTAAGTACCTTAGAAGCTCATCAAACATACTACTGCTCCCACAGAGTCACCAAATCCAGCAATGACGATGACTCAAAATCCACAGGAGCCGAACCCAGCGGAAACCAATCCGACATTGACCTCTCCGAACCGTCAGCGAAAACAATTCGAACAGGAAAACAGTACACTTGCAATCAGTGCTCCTACAGTGCCGATAAGAAAGTCAGCCTGAATCGGCATATGCGGATGCACACCGTGTCTCCTAGTCCTAGTCCCTTAAATTCCGCAACAGCAATACCGAATGGTGAACAAAATACCGAGAGCCAAGATCGATACTGTACGGATTGCGACATCAGATTCAGTTCGCAGAAGACATTTCGCGCACATAAAACGCATTACTGCAACTCGAGGCATATGGTCAAATCTACATCCATGCCTCCTGCTACCAAAACAACTTCCAGTTGCACTTCGAGTTCTTCCCCAACATCTCCCGTGGATACGGCGTCTTGCAGAACACCGCCGTCTCCGGCTCCGGCACCGCAAGTCCCACCTCAACAACCCTTTCTAGCGTTACCTACTAATCCCATAATAATCGTGCCATACTCTTTGTTCCGTAGCGCCAGCGTGTTACCCAATCTATCATCAGCTGCAGGTCTTCCAAATCCTGATATGCCGTGCTTTCTGTTACCCAACGGTACGTTTCAACCAATGACGAGTAGCATAACTCCAAATCCATCAAACCAACAATCTGAGGTGCTCAAAACGACCAACAAACCCAAAGAATCTTCTGTCATCAGAGAAATCACTTCAGCACCCCTTGACTTGAGCGTTAGAAAATCTCCGGAACCGAAAGATCTGGTGATTGATCTCGGCGATGAGCAAGAGAAGAAGATCGTCAAACGATCGCCCACGCCGGAAAGGATCGAGTGCGTACCCTCACTGCACAGCTCCCCATCTTTTACGCCGATGTCTCAAATTGGTGCTTCTCCTTCCGTAAGTGTGTCTCCGAAGAGGAAACACGAGGAAACGTCTCGAACTAATAGCCCTAAGCAGTCTAGGCAGATACCCAAAACTACATCTGATGTAGAAAAGGCCAGCACAAGTCCCGCACCGCAATTCGACATTCCCCCTTCTCTTCACCCTCTTTTAATGCGTGCTGGTACTCTGCCGCTGTTTCCCCCTGAAGTGCAGATGAGACTGTCGGATATGCCAGCGCTTCCGCCAGTGGTTCCACAATTTTTGGTCAAGCAAGGAGCTTCGAAATGTAAAGGTTGTAACATAGTGTTTTGCAACCAGGAAAACTATCTCGCCCATAAAAAGCATTACTGCTCCGCCAGGAATTTAGAGGAAGACGCTTCCAAGACGTCGGGAAGCCCTCCGGTAAGCCCCAGAAGCACCGGTACTATTAGTCCGGCTGGTGGACAGTACCAGCAACTAATTTGCCTAGCGTGCGGAATCAAATTCACCTCGCTGGACAACCTGAACGCACACCAAGCCTATTATTGCCTTAAAAGGAACGAAATGGACCTGAGAAAGTGCGGCAAGTGCAGAGGACTCGCCGAACCTGGACACCAGTGCGTTCCACACGCAACTCTGGCAGGCTGGAAGTGCCCATGCTGTGACGTCATCAGTTCCACGGCCAGCGCGGCTCAAAGGCACATGGATTCTCACACGGGCGTGAAGGCGTATCGGTGCACCATCTGCAAGTACAAGGGAAACACGCTTAGAGGGATGAGGACGCATATCCGAATGCATTTTGACAAGAGATCTCCAGATCTCCAGGAAGAAAAGTACATCTCCTATATCCTGGAGGATGAAAGTTCGAATATGATGGAAGTGAACGTATCTTCCACAGCCGGCCCCACCCTATTAGACGACAGATCCGTATCCCCCAGCTCTGAAGGACACCTGGACACTCTCCATCATTGCCCCCAGTGCTCTTACAGTTCCGCCTACAAGGCCAACGTCTTACGGCACATTCGTCTCGTACACGAAGTCTCTCCCGTTGACGATGGTGTCGTGAATGGCTCGGACGACAAAACGGTACGATCTATGCCTGTCCTGGAGGAAGATGAGGAAATCATGGTGAAAAAGGAGGCTATAGAGCCAGAAGTCATCATAGCACCGTTGGATGAACCGGTTATAAAAGAAGAGGTATTCGATCATTCCATCACTTCCAAGTTGAAATCCGTCGAAGAAGAGATCTTGCCCGAGACATCCAAACCCGGCACTAAATACTGTAAATCTTGCGATATTTCATTTACTTACTATAAAACCTTCGTGGCGCATAAAAAGTTCTACTGTTCGAGTCATGCCGGGGAGATGACAGCTGCATcagctaataataataacaacccTACCACACATGCAGCAGAAACGTCAGTTCTGTAG
Protein Sequence
MYNRVEYSKSEERGSQAFCSDVMRVGTVGEVEDWTSDPADTTTSDGPAPCSPTKSNTPDQTIVAEENEKDNPKTEPEKTPRIRLKTNLATDPALHPHPPATPSLSNLKTEIEASQSPSEYLAVLPPAIQSALVSRGFFLPNLIPGPEVVPRQADCVESRQPSVPIFQCSPCGIRFSSLSTLEAHQTYYCSHRVTKSSNDDDSKSTGAEPSGNQSDIDLSEPSAKTIRTGKQYTCNQCSYSADKKVSLNRHMRMHTVSPSPSPLNSATAIPNGEQNTESQDRYCTDCDIRFSSQKTFRAHKTHYCNSRHMVKSTSMPPATKTTSSCTSSSSPTSPVDTASCRTPPSPAPAPQVPPQQPFLALPTNPIIIVPYSLFRSASVLPNLSSAAGLPNPDMPCFLLPNGTFQPMTSSITPNPSNQQSEVLKTTNKPKESSVIREITSAPLDLSVRKSPEPKDLVIDLGDEQEKKIVKRSPTPERIECVPSLHSSPSFTPMSQIGASPSVSVSPKRKHEETSRTNSPKQSRQIPKTTSDVEKASTSPAPQFDIPPSLHPLLMRAGTLPLFPPEVQMRLSDMPALPPVVPQFLVKQGASKCKGCNIVFCNQENYLAHKKHYCSARNLEEDASKTSGSPPVSPRSTGTISPAGGQYQQLICLACGIKFTSLDNLNAHQAYYCLKRNEMDLRKCGKCRGLAEPGHQCVPHATLAGWKCPCCDVISSTASAAQRHMDSHTGVKAYRCTICKYKGNTLRGMRTHIRMHFDKRSPDLQEEKYISYILEDESSNMMEVNVSSTAGPTLLDDRSVSPSSEGHLDTLHHCPQCSYSSAYKANVLRHIRLVHEVSPVDDGVVNGSDDKTVRSMPVLEEDEEIMVKKEAIEPEVIIAPLDEPVIKEEVFDHSITSKLKSVEEEILPETSKPGTKYCKSCDISFTYYKTFVAHKKFYCSSHAGEMTAASANNNNNPTTHAAETSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00110994;
90% Identity
-
80% Identity
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