Eads027041.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000609.1:9568-15121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.17 12 7.3 2.6 1 23 292 315 292 315 0.95 2 8 2e-05 0.0013 19.7 1.3 1 23 324 346 324 346 0.98 3 8 0.033 2.3 9.6 0.2 1 23 355 378 355 378 0.93 4 8 2e-05 0.0014 19.7 2.3 1 23 387 409 387 409 0.98 5 8 0.00019 0.013 16.6 0.7 1 23 418 440 418 440 0.98 6 8 2e-05 0.0014 19.7 0.2 1 23 449 471 449 471 0.98 7 8 2.3 1.5e+02 3.8 0.9 3 23 482 503 480 503 0.94 8 8 0.0001 0.007 17.5 1.4 1 23 512 535 512 535 0.96
Sequence Information
- Coding Sequence
- atgtatttagaAGATACTGGAGAAGTGACAAATGAGGTTCTAGATGTACTTTTATTGGATACGGACCAGACTCCATTTCAGGGGCCAATGATCTGTCTCAAGTGTTCCCAAAAGGTGAATATCCTATTTGAGTTCAAGTCGGCATGTTTGTATGTggaagacttcattacaccgTTTGTAAATACAGAAAAAGGGAACCAAATCGATCTAAAGGAAGTGtatataagcaaaaaaggtgTTAAAGACCTCATTGATGCTTTACTTGGTCGGGATTTATGCAGGCTGTGCATGAGTGTGGTGGATAACGGATGCGTTTATTTGGATTCGAGCGATTTACATGTAAAGTTTGTCAAAGAGATGATCAAACGATGCATCCCTGAAATAaaCGTGAACAACACTAGAAACGCTGTCGTGTGTGGTACCTGTGTCGGTTGCCTCAAAGACTTCTGTAATTTCATGGAGAGTTACTCAGAAAGTAGCTCATCTAGCcgctCCCAAACAACAGGAAAGTCATTGGAAGCCGATACTGAACTTGACCCTCTGCCTAAAACCTCGTTAGCATCCTCTTCTAATAGAACAATTGAGTTGAAGGAGGAACGAGGATTGTTCAGTGAtccttttattattaagaCGGAGGAGGATGAACTAATCGGTGATATTCAGAAGTATGAAATAACTTGTGGTCCTGTTAAACCAGAGATCGGTGAACTGCCTGACGATTGTTCTATTAAAATCGAGGAAGCTGAGATTGTACATGATACTATTAAACTAGAAGGACCTGAACTTGGTTTGAAAACGGAGTGCGTTGAGAGTTTTCAACGAAACGAAACGCTGCAACTGCTAAGTCACAACAATCCGTCGGAAACGAAATGGTACGAATGTAGTTTATGCAATTACAAGACAAAAGATAAATGGTGTATCAAGGTCCACACTACATCGATCCATAAGGATCCCTCGGAGATAAAATGGTACGAATGTAATTTGTGCAAATACAAAGCGAAACAGAAAAGCAATTTAACAACCCACATGCTGATTCACAAGGATCCATCAGAAATAACATGGTACGAATGTAGTTTGTGCGACTACAAGACAAAAGAGAGGTGGCGTTTGCAGATCCATATCACAGGGATTCATAAAGATCCATCGGAGATAGAATGGTACGAATGTAATTTATGCGAACACAAGACGAAACAGAAAAGCAATTTGAAAGTCCACATGCTGATTCATAAAGATCCATCCGAGATAACATGGTACGAATGTGATTTGTGCAAGTATAAGGCGAAACAGAAAAAAGATTTGAGAATCCACATGCTGGTTCATAGGGATCCGTCGCAGATAAAGTGGTACCCATGTGATTTGTGCGAATACAAGGCGAAACAGAAAAGCAACTTGAAAGCACACATGCTGGTTCATAGGGACCCATCGGAGATAACATGGTACGGATGTAGTTTGTGCGAGTACAAGGCAAGAGACAAATGGTGTTTGAAGGGTCATGTTACGAGGATCCATAAAGATCCGTCCGAGGTAGAGTGGTACGATTGTACTTTGTGCGACTAtaaaggaaaacagaaaaggaaTTTGAAGCGACATATTAAATTGATTCATACGGAGGCATCAGAGATCAAATTGCAGAAGCGTGATCCGGTGCGACTACAAGGCAAAATAGAAATTTCTGCTAACAAAACATCGAGATAG
- Protein Sequence
- MYLEDTGEVTNEVLDVLLLDTDQTPFQGPMICLKCSQKVNILFEFKSACLYVEDFITPFVNTEKGNQIDLKEVYISKKGVKDLIDALLGRDLCRLCMSVVDNGCVYLDSSDLHVKFVKEMIKRCIPEINVNNTRNAVVCGTCVGCLKDFCNFMESYSESSSSSRSQTTGKSLEADTELDPLPKTSLASSSNRTIELKEERGLFSDPFIIKTEEDELIGDIQKYEITCGPVKPEIGELPDDCSIKIEEAEIVHDTIKLEGPELGLKTECVESFQRNETLQLLSHNNPSETKWYECSLCNYKTKDKWCIKVHTTSIHKDPSEIKWYECNLCKYKAKQKSNLTTHMLIHKDPSEITWYECSLCDYKTKERWRLQIHITGIHKDPSEIEWYECNLCEHKTKQKSNLKVHMLIHKDPSEITWYECDLCKYKAKQKKDLRIHMLVHRDPSQIKWYPCDLCEYKAKQKSNLKAHMLVHRDPSEITWYGCSLCEYKARDKWCLKGHVTRIHKDPSEVEWYDCTLCDYKGKQKRNLKRHIKLIHTEASEIKLQKRDPVRLQGKIEISANKTSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -