Eads025488.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000357.1:109994-111652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.73 11.1 2.0 1 23 10 32 10 32 0.97 2 17 0.00028 0.019 16.1 2.2 1 23 41 63 41 63 0.98 3 17 0.12 8.3 7.8 4.7 1 23 72 94 72 94 0.96 4 17 0.011 0.73 11.1 1.9 1 23 103 125 103 125 0.97 5 17 0.63 43 5.6 1.9 1 23 134 157 134 157 0.95 6 17 0.023 1.6 10.1 5.5 1 23 185 207 185 207 0.96 7 17 0.00061 0.041 15.0 1.9 1 23 216 238 216 238 0.97 8 17 1.7 1.2e+02 4.2 7.6 1 23 247 269 247 269 0.97 9 17 0.0047 0.32 12.3 2.3 1 23 279 301 279 301 0.98 10 17 3.4 2.3e+02 3.2 3.8 1 23 311 333 311 333 0.96 11 17 0.21 14 7.0 2.7 1 23 342 364 342 364 0.97 12 17 0.00022 0.015 16.4 1.5 1 23 373 395 373 395 0.97 13 17 0.16 11 7.5 1.5 1 23 404 426 404 426 0.98 14 17 0.26 18 6.8 0.8 1 23 435 457 435 457 0.94 15 17 0.00037 0.025 15.7 0.5 1 23 466 488 466 488 0.98 16 17 0.001 0.07 14.3 5.2 1 23 497 519 497 519 0.98 17 17 0.043 2.9 9.2 0.6 2 23 529 550 529 550 0.97
Sequence Information
- Coding Sequence
- ATGATCACGCATGAAGAAATCCAGTTGTATCAGTGTGATTCGTGCGATTACAAATCGAGGCGGAAACAATTTTTAGCGAAGCACAAAGACATTCATAAAGATGCGTCCGACATCCGTTGGTACAAATGTGATTCGTGCGAATATAAAACTAACAACAAGAGCACGTTAAACAGACACAGACTGGTACATAGAGACCCTTCACAAATCCAGTGGCACAACTGTGACTTATGCGATTACAAAACTAAAGTGGAAAAGTGCTTAAAGAGGCACGCTTTAACGCATAAAGATCCTTCAGAGATTCAGTGGTTTCATTGCGATTTGTGcgattttaaaactaaatacgCAGAATCGTTAAGAGTACATGCAATGAAACATAAGGATCCATCAGAAATTCGATGGTTTCGGTGCGAATTGTGCGATTATAAAACTTTGTACTCGTTGAAGTTAAAAAAACATGCCATGACGAGACACAAAGATCCCGAACCAACGTATAAATGCGAAGGTGATCTAAATACAATTTGCAAGGCAGAACCTGAATGTGCCACCGGGTTGCATAACTGTCACTTGTgcgattttaaaacaaaacaaaagtaCAGGTTAAATATGCATATGATAGTGCATAAGGACCCTTCAGAAATTCAGTGGTTTAACTGTGATACTTGCGACTACAGAACTAAGTACAAAGGCGATTTAAAGAAACACGCGACGACGCATAAAGAATGTTCAGAAATCCGATGGCACCAGTGCGATTTCTGCGATTATAAATCTAAATGTAGGAAGTTGTTAAAGCGGCACATGACCCTACACAATGGCACCTCCTCAACAATCCGCTGGCATAAATGTGATTTGTGCGACTACAAAAGCATGCAACTACGCAACGTGAAGAGACACATGCTCGTGCATAAAGACCCGTCAGAAATTCACCAGTGGCATCACTGTAATTCCTGTGATTTTAAATCAGTTTACGTACAATCTTTAAAAGTTCACGAGCGCCTACATAAGGATCCATCAGAAATTCAGTGGTACCACTGTGATTTGTGCGACTATAAAAACAAACGCAAAGGATTGTTAACCCTTCACAAGATTTCACATAAAGATCCGTCAGAAATCGTTTGGCATAGATGCGACTTGTGCGACTATAAAAGTATCCGATTGTACAATTTAAAGAGTCACATGGCGGTACATAAAGATCCATCAGAAATCGAGTGGTATACGTGTGATTCCTGCAAGTTCAAAACTACGTATATACGGTCTTTAAATTCCCACGCGCAGATACACAAAGACCCGGCAGAAGTTCAATGGCATACGTGCGATTTGTGTGATTATAAAAGCTTGAATAAGAGGGCGTTAAAGGATCACGTAGCCGTACACAAAGACCCATCAGAGATTCAGTGGTATCAGTGCGACTTTTGTGATTATAAGGCGAGGCAAAAAAAGGCCCTAACAGACCACATGGTAGTGCACAAGGACCCGTCGGAGATAAAGTGGCATGAATGCAGCCTTTGCGATTATAAAGGGAAACAGAAAAAATCGTTAACGCATCACATGTTAACACACAAAGATGCGTCGGAGATTCAGTGGCGTCAGTGCAGTGTATGCGATTACAAAGCCAAGTGGAATTATTTACTAAAGAGACACATGGTTAAACATAAGAATTAA
- Protein Sequence
- MITHEEIQLYQCDSCDYKSRRKQFLAKHKDIHKDASDIRWYKCDSCEYKTNNKSTLNRHRLVHRDPSQIQWHNCDLCDYKTKVEKCLKRHALTHKDPSEIQWFHCDLCDFKTKYAESLRVHAMKHKDPSEIRWFRCELCDYKTLYSLKLKKHAMTRHKDPEPTYKCEGDLNTICKAEPECATGLHNCHLCDFKTKQKYRLNMHMIVHKDPSEIQWFNCDTCDYRTKYKGDLKKHATTHKECSEIRWHQCDFCDYKSKCRKLLKRHMTLHNGTSSTIRWHKCDLCDYKSMQLRNVKRHMLVHKDPSEIHQWHHCNSCDFKSVYVQSLKVHERLHKDPSEIQWYHCDLCDYKNKRKGLLTLHKISHKDPSEIVWHRCDLCDYKSIRLYNLKSHMAVHKDPSEIEWYTCDSCKFKTTYIRSLNSHAQIHKDPAEVQWHTCDLCDYKSLNKRALKDHVAVHKDPSEIQWYQCDFCDYKARQKKALTDHMVVHKDPSEIKWHECSLCDYKGKQKKSLTHHMLTHKDASEIQWRQCSVCDYKAKWNYLLKRHMVKHKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -