Eads001599.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000002.1:4802665-4806695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.25 17 6.8 4.1 1 20 8 28 8 30 0.94 2 14 3.7 2.5e+02 3.1 1.4 1 14 38 51 38 52 0.87 3 14 0.00055 0.037 15.2 2.1 1 21 56 76 56 77 0.96 4 14 0.0041 0.28 12.4 1.0 5 23 88 108 77 108 0.80 5 14 0.00027 0.018 16.1 2.3 2 21 134 153 133 154 0.93 6 14 0.00017 0.012 16.8 2.6 1 21 165 185 165 186 0.96 7 14 5.5e-06 0.00037 21.5 1.7 1 23 194 216 194 216 0.99 8 14 0.5 34 5.9 0.1 1 15 304 318 304 319 0.93 9 14 0.034 2.3 9.6 9.3 1 21 332 352 332 353 0.95 10 14 0.73 50 5.4 0.9 1 17 361 377 361 378 0.91 11 14 4e-05 0.0027 18.8 6.1 1 21 379 399 379 400 0.96 12 14 0.0068 0.47 11.7 2.1 1 23 408 431 408 431 0.94 13 14 0.00091 0.062 14.5 4.3 1 21 439 459 439 460 0.96 14 14 0.2 14 7.1 5.1 1 23 468 491 468 491 0.96
Sequence Information
- Coding Sequence
- ATGCTTTTCGAAAACGACAGATTCAAGTGCCTCAGGTGCAACAAGCGCGCGTACAAGCACAAGCGCCATCTGACTAGACACCTGGTGTACGAATGTACGAGTTTGAGAAACTTCGCGTGCCCCATGTGCAACTTCGTCTATTGTTACCAGGACGGGGACGGCTGGTACAGGTGCAAAAGGTGCGGTAAAGGCTACAAGAACAAAACGACGACTCAGCGACATTTAAAGTACGAGTGCGGGAAAGAAGCCGCCTTCATCTGCGAGTGCGGCTACGCCTTCAAGAGGAAAGACAAGTTCGTGTACCACATAAAGACGAAGAACCACAGACCTAGGTTAGGTTGTTATACTATAGTAGATGTTCTTGTAGGTTTCATCTACAACGTGGGCTCTAGCAAGTGGCAGTGCAGGAACTGCGACAAGCAGTACAAGAACAAGAGCCACCTGTACAGGCACGCTAAGTACGAGTGCGGCAAGGATCCGCAGTTCATGTCGTTCAAATGCGATACCTGTCCGAGGGCGTACAAAAACAAGAAACACCTCATCCAGCATAAGAGGTTCGAATGCGGGGTGGATCCCAAATACAGCTGCGGTTACTGCAACTACAAAACTAAGAGGAAAGGAAGTTTGACGGCGCACATCAGGCGACATCTGGATTTAGTACAAGACAACTACCCAATTATAGAATTAAGATCTGACAGTAGTCGCCAATATCGCAGGAACCACTTGGAAAGCGGAAACAATCCCAAATTCTATTGCCTTCACTGCTCCTACAAAATGAAGATGAGGAGAACTTTAACAAGCTACCAACAAATATACGCTTGTAACGTTTTAGAACCACTGGAAGGAGACGAACCAATTGAAGCTGATCAAAGCCAAGACGAGATAAACGTGAATTTTGTATCCGAAAggtACAGATGTGCTACTTGCCCCAGGATTTACGAACGAAAAGAAAACATGGATCCATTTGAGAAAGTTACTGGCTGCGGAATAGCGTTTAAATGCGACGCCTGTCACAGATCTTACAAACACAAGAAGCACCTCACCCATCACAAGAAGTTCGAGTGCGGAATAGAACCGCAATTCCACTGCCCTTATTGCTCGTTCAAGAGCAAGAAGAAAGGGAATCTGGCCTGGTTCAAATGCCACACCTGTCCCAGGTCCTACAAGCACAGGAAGAACCTCACCAGACACCAGAAATACGAATGCGGAAAGGACCCAAAGTACAACTGCCGGTACTGCTCGTACAAGAGCAAGAGGAAAGAAAGTCTGACCAGTCACGTGGAAAACATGCATAGATTCcaaatcgTAAGGAGATTCAACTGCCCTACCtgcgaaaaaaattacaagcaCAAGGCGTCGCTTCACCACCACATCCGATTCGAGTGCGGAGTACCGCCGCAATTCAACTGCGAGCTTTGCACCTACGTCGGAAAAAGGATCCACCATTTGCAAAGCCACTACAAATATTACCACAAAATGGACTATTCGATTAGGATGCTGAGATACTAA
- Protein Sequence
- MLFENDRFKCLRCNKRAYKHKRHLTRHLVYECTSLRNFACPMCNFVYCYQDGDGWYRCKRCGKGYKNKTTTQRHLKYECGKEAAFICECGYAFKRKDKFVYHIKTKNHRPRLGCYTIVDVLVGFIYNVGSSKWQCRNCDKQYKNKSHLYRHAKYECGKDPQFMSFKCDTCPRAYKNKKHLIQHKRFECGVDPKYSCGYCNYKTKRKGSLTAHIRRHLDLVQDNYPIIELRSDSSRQYRRNHLESGNNPKFYCLHCSYKMKMRRTLTSYQQIYACNVLEPLEGDEPIEADQSQDEINVNFVSERYRCATCPRIYERKENMDPFEKVTGCGIAFKCDACHRSYKHKKHLTHHKKFECGIEPQFHCPYCSFKSKKKGNLAWFKCHTCPRSYKHRKNLTRHQKYECGKDPKYNCRYCSYKSKRKESLTSHVENMHRFQIVRRFNCPTCEKNYKHKASLHHHIRFECGVPPQFNCELCTYVGKRIHHLQSHYKYYHKMDYSIRMLRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -