Eads017912.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000089.1:374176-375513[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0042 0.28 12.4 1.7 1 23 119 141 119 141 0.98 2 10 0.42 29 6.1 4.5 1 21 150 170 150 173 0.90 3 10 0.00056 0.038 15.1 2.4 1 23 182 205 182 205 0.98 4 10 0.00041 0.028 15.6 4.7 1 23 211 233 211 233 0.98 5 10 0.00081 0.055 14.6 1.4 1 23 242 264 242 264 0.97 6 10 3.6e-05 0.0024 18.9 1.7 1 23 273 296 273 296 0.97 7 10 3e-05 0.0021 19.1 1.3 1 23 305 327 305 327 0.98 8 10 0.0063 0.43 11.8 0.6 1 23 336 358 336 358 0.98 9 10 0.0014 0.098 13.9 0.6 1 23 367 390 367 390 0.96 10 10 0.00033 0.022 15.9 1.8 2 23 400 421 400 421 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAGATAAAATTGGAGTACCCTCCAGAAGATTCAACTGATGAGAAAGACCTATTGACACCCGCAACGCAAAGCTTGGGTCCAAATAGCTCGCCGTTTAGTTGTCCTGTTACAGAAACTTTTGTAAAAGAAGAAATCGACTGTGAGATTAAAACTGAAGAAGTGGACATTAAACCGTTTGACTGTGCTCAATTTGAGGACCCCCAAGAAGATTTATATAGAACTGGACAGTGCGAAAGCGAGCTGCACAGTCGTGAAATCAAGTTCTTAGATGATCCCAATGACGAAGCATATATGAAGCAATCAAAATTCGATCCCAAAACTAGCAACAACCGACTACAAGTAAAGCGGTTCAAATGCGATTCCTGTAAATTCCAAACCAATAGGAAAAATGACTTGAAGGGTCATATGTTGATCCATGCCGATCCGACGCAAGTGACTTGGTTCAAATGTGATGCGTGCAGTTTTAAGACTAAACACAAAAACAGTTTGACGAGACACAACAGTTTTGTGCATAAAGATGCTTCGCAGTTACAGCCGTACGAATGCGACCAGTGTGATTTTCAAGCGAAACACAAGTCCACTTTGAGAACGCATATCCAGAGGGAACACGAAGATGCATCATGGTTTGAATGCGACTTCTGTGACCATCGGACGTACAAGAAAAGTAACTTGCAAAAGCACCTATTGAGGCATAAAGATCCTTCCGAGGTTGAATGGTACGAGTgtaatttttgtgattttaaaTCTAGAAACAAACCCTCGTTGAAAAAACACGAGCTGGTTCATAAAGATGCTTCGGAGAGGGTGTGGTTCAAATGCAATTTATGTAATTTCAAGACGAAGCAAAAAGGCAATTTAATGACTCACATCAGACTGGTTCATGCAGGTCCTTTGGAAGTggaatggttcaaatgcgaTGTCTGCGATTTCAAAACAAGACagaaaaacagtttaaaaattcatatgtTAATCCATAAAGACCCGTCTTCGATCGAATGGTTCGAGTGCGAATTGTGCGATTTCAAGACAAAAATGAAACAGACTTTAAAAGGTCATATATTGGTTCATATGGAGCCCGAGGAGGAGGAGTGGTTCAGATGTGATTTGTGCGATTTCAAGGCGAAGCGGAGAGGCGGTCTGAGGAGGCATACGCTGATAATGCACAAACATCCTTCGCAAATAAAATGGGCCGAATGCAACGTATGCAGTTACAAAACAAAGCTCAAGGCTAATTTGAAGAAACATATGACGACTCATATAGGACGAATTTAA
- Protein Sequence
- MQEIKLEYPPEDSTDEKDLLTPATQSLGPNSSPFSCPVTETFVKEEIDCEIKTEEVDIKPFDCAQFEDPQEDLYRTGQCESELHSREIKFLDDPNDEAYMKQSKFDPKTSNNRLQVKRFKCDSCKFQTNRKNDLKGHMLIHADPTQVTWFKCDACSFKTKHKNSLTRHNSFVHKDASQLQPYECDQCDFQAKHKSTLRTHIQREHEDASWFECDFCDHRTYKKSNLQKHLLRHKDPSEVEWYECNFCDFKSRNKPSLKKHELVHKDASERVWFKCNLCNFKTKQKGNLMTHIRLVHAGPLEVEWFKCDVCDFKTRQKNSLKIHMLIHKDPSSIEWFECELCDFKTKMKQTLKGHILVHMEPEEEEWFRCDLCDFKAKRRGGLRRHTLIMHKHPSQIKWAECNVCSYKTKLKANLKKHMTTHIGRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -