Eads024532.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000286.1:92832-95253[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.037 2.5 9.4 0.1 2 23 302 324 301 324 0.94 2 11 1.5e-05 0.001 20.1 1.3 1 21 330 350 330 351 0.95 3 11 0.00071 0.048 14.8 8.0 1 23 385 407 385 407 0.96 4 11 0.0039 0.27 12.5 0.4 1 23 414 436 414 436 0.96 5 11 0.0052 0.36 12.1 3.2 1 23 442 465 442 466 0.94 6 11 3.2e-05 0.0022 19.1 0.5 2 23 471 493 470 493 0.97 7 11 1.1e-05 0.00074 20.6 1.1 1 23 499 521 499 521 0.99 8 11 4.8e-05 0.0033 18.5 1.6 1 23 547 570 547 570 0.97 9 11 0.017 1.2 10.5 3.2 1 23 576 598 576 598 0.98 10 11 0.2 13 7.2 0.4 3 23 608 628 606 628 0.90 11 11 0.074 5 8.5 6.0 1 23 634 657 634 657 0.91
Sequence Information
- Coding Sequence
- ATGTTGTGCAGGACTTGCCTGGGGGTGCTGGACCTGTCCTCCAGTATACCCTTATCAAAGAAGCTGCCTATTGGAAAATCTGTTAAGGAAATATTGCTTTTCTTTATTCCACAAATGgCGCAATCGAAACTGGTTGACCAATTTGCCTGTTCGCTTTGCTCGCAAATACTACAAACATTTATAAAGTTTATAGAAGAATGCATCGTCGTCGATAATTATTTGAAAGAGAAACAGAATCAAAACACCTCCAAAGGTATAGCGGAAAGGAGTACACCTGAAACGCACTCCATAGTTAAAATTAGGAAATGcgtgttaaaaaataatgggaAACAGAAAGAACTAAATCGAACAAATAAGTTAACGCTTAGCTCACGTTTCCTACATATGAATAACTTTGCCGAAAACTCTAGGAAAAAGATCCCAAGTCTGTCTCGAGTAGTCGACAAAAACAAACGTGGTATTTTGAACAAGAGTATTAAAAAAGATTTCCTGAACCAGAAACTTCCTGTGTTTGATCAAATTGAAcctgataaaataattttagaaccGCGTAATAAAAACGCCGATTCAAGTGCAGAACAGAGAAGTAAATCAGATGTTCAGTACTTCAACAATTTCCTAGAACGCACAAAAACGTTCCAAGGCAATGAAAAACTTTCAAAGTTCAACAGGGTTGTAAGTATCGCTACAACAAACAGAAATGTTGACATTTTGAGACTATTTAGTGAAACCACAATCGAGACGTTGAGTGTACAATCACTCGAGGAAACTGGAAGGAAAAGAATACTTTTTATCGGTgaacaattttacaatttaggTAGGATAGAATATAAGCGTAACAAATGCAGTAATGCAAACACGGTTCAGAAAAAGCGTAAGGAAGTGCTTCTCGAGAAGTTCAAACAGTGTCCTGTATGTGAAGAGAAACTTGCAACGGAACCAGCGCTGAGGAAACACTTTAAACAAGTACATCCGGGTTATTCTCCTTACACGTGTGaaaaatgtggtaaaaaaTTCAGAATGAAAAGCACTTACCAGAAACACGTGAATATCTTCCAGCCGTATAAAACTTGTAACGTTAAAAAGTGCCTTGTCTGTCACAAGAGGATCCCTCGAGATGTATTTCACAGCCACATCCTCGCTCATAAGACACATCATTGTCACCTATGCAAACGGAGGTTTACCTATGCAAGTAACCTGCAAAATCACCTCCTATACCACGAAAAGCCAAAACCAAAGCATATCTGCCCATCTTGTGGCAGAGCATTTGTAAAATTGCCGTCATTTTTGTTACATGTAAAGTCTCATTCGAAAGACACCTGTTACCTCTGCGATAGGTGTTCGAACACTTACAAAACCAAAAGACAGCTGCTGAGGCACATCCTAAAAGTGCATCACGAGAGAATTAGCAAATGTGCGATATGCCAGCAGGAATTTGCAAATAAGAAAGCACTGAGGGCTCACATGAAaTCACAGCATCCAGATACATTTTTATACCAGTGTCACTTGTGTGGGAGGGGATTTTACATGGCTGCAGACCTGAGCAGGCACCTAAGACAACATAGGACACAAGGCGTTCATTCCAAATCGCATACCTTTGCTTTCAACTACAGATATGGTCGAGGGAAAGGTGAATCATTTCCCTGTAAGTACTGCAATAAGATATTTACGAAAGTTAGCATGTTAAGGTTGCATTTGTTGAGATTTCACTTGAAAAACGAAAGGTTCAGATGCCGGTTCTGTAGTCTAACATTCGGAGACTCCTCGTCTAGAACACGACACGAAAAGAGGCATCGAGACCCAGAAACATACGAATTAACctgtATAGTTTGTTGGAATCGCTTCGACACCAAGGAACAGTTAGAGCAGCATTCGCTGAAACACCTAGGGTCTAGGAGACATAGATGCGACCAGTGCGGTGAATCGTTCCCAAGCAGGTTCTTGATCCACCACCACAAACGCGACAAACACTACAACGAAGATCTAGTCAAGCAAGAACAGAAAGCCATGCTACAGGAGGGGTTGGATGGTATGCTCCTCTAG
- Protein Sequence
- MLCRTCLGVLDLSSSIPLSKKLPIGKSVKEILLFFIPQMAQSKLVDQFACSLCSQILQTFIKFIEECIVVDNYLKEKQNQNTSKGIAERSTPETHSIVKIRKCVLKNNGKQKELNRTNKLTLSSRFLHMNNFAENSRKKIPSLSRVVDKNKRGILNKSIKKDFLNQKLPVFDQIEPDKIILEPRNKNADSSAEQRSKSDVQYFNNFLERTKTFQGNEKLSKFNRVVSIATTNRNVDILRLFSETTIETLSVQSLEETGRKRILFIGEQFYNLGRIEYKRNKCSNANTVQKKRKEVLLEKFKQCPVCEEKLATEPALRKHFKQVHPGYSPYTCEKCGKKFRMKSTYQKHVNIFQPYKTCNVKKCLVCHKRIPRDVFHSHILAHKTHHCHLCKRRFTYASNLQNHLLYHEKPKPKHICPSCGRAFVKLPSFLLHVKSHSKDTCYLCDRCSNTYKTKRQLLRHILKVHHERISKCAICQQEFANKKALRAHMKSQHPDTFLYQCHLCGRGFYMAADLSRHLRQHRTQGVHSKSHTFAFNYRYGRGKGESFPCKYCNKIFTKVSMLRLHLLRFHLKNERFRCRFCSLTFGDSSSRTRHEKRHRDPETYELTCIVCWNRFDTKEQLEQHSLKHLGSRRHRCDQCGESFPSRFLIHHHKRDKHYNEDLVKQEQKAMLQEGLDGMLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -