Eads001582.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000002.1:4761484-4764153[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.071 14.3 0.1 2 21 2 21 1 22 0.94 2 13 0.00013 0.0089 17.1 0.9 1 20 30 49 30 50 0.95 3 13 0.00028 0.019 16.1 0.7 2 21 84 103 83 104 0.94 4 13 5.7e-06 0.00039 21.4 0.5 1 20 112 131 112 132 0.95 5 13 0.003 0.2 12.9 5.0 1 21 147 167 147 168 0.95 6 13 0.00056 0.038 15.2 2.4 1 21 176 196 176 197 0.95 7 13 0.00027 0.018 16.2 1.0 1 21 220 240 220 241 0.97 8 13 0.00077 0.052 14.7 5.9 1 21 248 268 248 269 0.95 9 13 1.2 81 4.7 2.5 1 19 277 295 277 298 0.91 10 13 0.0041 0.28 12.4 2.6 1 21 307 327 307 328 0.96 11 13 0.3 20 6.6 1.8 1 21 336 356 336 356 0.91 12 13 0.017 1.2 10.5 3.6 1 20 375 394 375 396 0.96 13 13 0.028 1.9 9.8 6.5 1 23 404 428 404 428 0.92
Sequence Information
- Coding Sequence
- ATGCCGTGCCCGCAGTGCGGCAAGATGTACAAAAACCTCGGCACCATCAACTCGCACCTGCGCCAAGACTGCGGCAAGGAGTGCACGTTCATGTGCAGCTACTGCAATCGGAGCTTTAGGAGGAAGCAGCGTCTCAAGGAGCACGTCGCTTGCGTGCACTACAAGAACCTGATGACCGTCTACGCTAGGCAAGACGACGCCGAACCCGGATTGGATCCCGCTGatGCTGTTGACGAATCGGAGCCTTGTCCGTGTCCGAAGTGCGGGAAGATCTACAAAAATAAGAGGACGGTGCTGGCCCACCAACGGTTAGATTGCGGGAAAGAGCGCAGGTTCCCTTGCAAGTATTGCGGGAAGAGTTACTCGAGGAAGCAGAGTCTTAAGGAGCACGTGGTGTTAACCTGCCGTTATGCCACACGCGAAGAGACGTGTTCCCGGTTCACGTGCGACAAGTGCGGGAAGTCCTACAAGCACATGCCCTCGTTGTGCAACCACAAGAAATTCGAGTGCGGAAAACCGCCGTCGTTCCAGTGCCGTTTCTGCACCAGCTCCTTCTCCAGGAAGCAGTCCCTGCAAAGGCACCTGATGTACACGTGCAGGAAATCGGAACGGCTAGAGCTTCTAGAACGGATTAAGCATAGGCGCATCCGGAAGACTTACACTTGCACCAAGTGCAACAAGGTCTACAAGTACGCCACCGGTCTGTACGCCCACAGGAGATTCGAGTGCGGCCCACATCTCTATTTCTGTAACAAATGCGGTAGATGCTACAAACACCAACCGTCCCTGAGCAAACACCAGAAATTCGAATGCGGCAAGACCAGATCCTTCGCTTGCCGCTTCTGCAAGAAGACTTTTTGGCACAAGCAAACGGTGCAGAAACACGAAACGAACATGTCGTGTCAATCCACCAGGATTTACAGATGCGACAAATGCAATAAGGTGTACAAATATTACAACGGACTGTACACGCACAAGAGATTCGAGTGCGGCAAGCAGAAATCCTTCCATTGCGTCCCGTGCAACAAAGCGTTCTGGCACAAACAGGCGTTGCAGAAGCACCAACGCTGCTCGAACTGTGACGACGTAGACTCGTACATAAAGTTCATGGAAGAAGGCAAGTACCAGTGTCTGAAATGTTACAAGCTGTACAAACACAAGTTTACCTTGACGAGGCACCTGGTGTACGAATGCATGAGGGAACCACCGTTTGCTTGTCACTTGTGCAGTTACACCTGCACCAGGAAGCACCGGTTGGAGGAGCACCTGCGTTCTAGAATCCACAGTTCTCCCATGGTGCTTACAGATTTGACTGTACGGAAAATCAGGAAATGA
- Protein Sequence
- MPCPQCGKMYKNLGTINSHLRQDCGKECTFMCSYCNRSFRRKQRLKEHVACVHYKNLMTVYARQDDAEPGLDPADAVDESEPCPCPKCGKIYKNKRTVLAHQRLDCGKERRFPCKYCGKSYSRKQSLKEHVVLTCRYATREETCSRFTCDKCGKSYKHMPSLCNHKKFECGKPPSFQCRFCTSSFSRKQSLQRHLMYTCRKSERLELLERIKHRRIRKTYTCTKCNKVYKYATGLYAHRRFECGPHLYFCNKCGRCYKHQPSLSKHQKFECGKTRSFACRFCKKTFWHKQTVQKHETNMSCQSTRIYRCDKCNKVYKYYNGLYTHKRFECGKQKSFHCVPCNKAFWHKQALQKHQRCSNCDDVDSYIKFMEEGKYQCLKCYKLYKHKFTLTRHLVYECMREPPFACHLCSYTCTRKHRLEEHLRSRIHSSPMVLTDLTVRKIRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -