Eads013695.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000046.1:1116532-1119324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 13 7.2 0.2 3 23 308 329 306 329 0.95 2 13 0.92 63 5.0 1.1 2 23 359 380 358 380 0.92 3 13 0.0038 0.26 12.5 0.8 1 23 386 408 386 408 0.95 4 13 0.00066 0.045 14.9 0.4 1 23 414 436 414 436 0.98 5 13 0.34 23 6.4 0.1 2 17 438 453 438 455 0.78 6 13 1e-05 0.00071 20.6 0.4 3 23 520 540 519 540 0.99 7 13 0.00056 0.038 15.2 3.3 1 23 546 568 546 568 0.99 8 13 0.00014 0.0093 17.1 3.8 1 23 574 596 574 596 0.96 9 13 2.9e-07 1.9e-05 25.5 3.6 2 23 602 623 602 623 0.98 10 13 1.3e-06 9.1e-05 23.4 2.5 1 23 629 651 629 651 0.98 11 13 1.5e-06 0.0001 23.3 4.7 1 23 657 679 657 679 0.98 12 13 0.0026 0.18 13.1 8.0 1 23 685 707 685 707 0.98 13 13 0.086 5.8 8.3 0.8 2 23 718 740 717 740 0.96
Sequence Information
- Coding Sequence
- ATGAAATTAAGTGGTGCTTCTGAAGCCCCGCACGTTATTGAGGCGACTGAAAGTTCCAGTGACAAGCATTTTAAAGACGATATTAAACGCAGATTctgcaatattttaaataaagaccCGCCTAAGAGTTCTTCCTGCTCCGAATGGAGTTCTCTTCCAAACTTGGAACATGCTGCACCGCCATTGCAAGATTCTTTGGGAATCGAAGAACGAAGTTGCTTGAATGATTTTTCCTTTATGAAGGAACAAGAGGTTGTATTGTTAAATGAAATATGTAGAGCTTGCTTAGTAAAAACGGATAATATGAAACATTTATTAGAACCTAGCGAAGATGTCGTACAAACGATTACAAAACTAGCATCAGTTTCAAATATCGAGGTCGATGTAAACGATACACTACCTTGTTACTTATGCAGTAGTTGCgaggaaaaattaaaactgtcGTACGATTTTCAACAGTTGTGCCAAAAATCGCATCAGTTTCTTTTAGCTTGCATATCTGCAAATTCTATAAGTTTTAAAGTGAACTCGTTTAAATCGCTACCGGTTGAGGAATATACAGGGAAGACTGAAACTGAAATAGAGGTGCTAACACTGGGTAATAATTCGGATGGTTTGATTAACTTTGTTGACAACTCTGCACTGGAAAACAAAATAGTTTCTTATTCCCCTCAGCCTGATTTAAATCAGGAAATAACTGAGGGACAAAGTAACTGTTGTGTGGAACCTGTGCAAAATGTAAATGATGTTAGAGACATAGATGTAGAAACTGTTAAAGAAGAAACCAAAGACTACACAATACCTGCTCAAGTTGAAAAGACGACAAAGTTCAACCAAAAAATGAGATTGCCACAGTTTGCTCCCGAACATGTGAACGGAATTATGAAAAAAGTAAAGGAAAAGTTTTTCAAGCACGTCAACTGTTTATATTGCGGTTTCGTAGCCAATAATACCAGAGCGCTGTCTTTACACATGACGCGGTTACACAAAGAATTGAAAAAGCAGTGGTGCCTTTGGTGTAACAAAGATTTCGCCGATATAACCGAACACAAATCTCGCCACAAAGACGATTTGAAATGTCCTTTGTGCGGTAAATACAAACAGACGACCGGCCATTTCATGGAACACCTAGCTAGTCACTCGATTGAAAGGAGCTACATGTGCTGGCAGTGCAGTAAGGGTTTTATTTCCATGAGACATTTAAAGGTGCACAGCGCTGTGCATACAAGCCAGAAACAGTACCAATGTGAGGTTTGTTCTAAGAAGTTAACGTCGTGGAAGTCTTGGAGTAGTCATATCAAGGCTCATCGTAAGTGTGAAATGTGTGGGCAGTCTTTTGTGTCGGATGAGGTGTACGAACAGCATGACTGTTTTCCGAAAGAAGTGGCGAAAAATGTGGAAACGGAGGAATTGCCGGAATTGAAACTCAGTAAGAAGAAATTGCCTCAGAATTACTGCAAGCTTTGTGATAGAAGAGTTCGGAAGCTTGAAAACCACTTGAAAAAGTTTCACACTCCAATCGACTCAAATGGAGGTATAGAAGACGTAAAAGCTTTGTGTTCGTATTGCGGGAAATTGTTCAAATCGCCTGCAAAGCTGACTGTACATGTTCGTACCCATACGGGTGAAACGCCTTATAAATGTTCGTACTGTAACAAACGAATGTCGACTAGGATACACCTGGTGGTGCACGAGAGAACCCATACAGGAGAGAAACCacatatttgtaaatactGTGGAAAGggtTTTGCGCAAACCAGTTGTTTAAACACTCATGTTAAACTACACACGGGTAGAACAGAGGAGTGCAGTATTTGCCAGAAAAGATTTTGTCGTCCTTCGGAACTGAAACAACATATGAGGACGCATACAGGTGAAACGCCGTATATATGTAAAATTTGCAACCAAGGATTCACTCAGAAAAGCCACTTAACCGGACATATCAGAAAACACACCAACGAAAGACCGTTCAAGTGTACTTActgtgaaaaacatttcaaacAGTCTTCTTCGCTTAAATCTCATATTAACATCCATTTAGggAAGAAACCGTACCAGTGTAACCAATGTTCCTACTCGTGTCGCCAGAGCTACTGCTTAAAGCAGCACATGCTGCAACACAACGACGAATCTAAATTCAAGTGGATTAACAAGTGCGACGTGTGCGaccagtatttttttaatttcgagTCGTATTCGTTGCATTACAATAGCGAACACGGGAGGTTGGAACAGGACGGCGTTATCAAAGAGGATATGATGGAAGTGCCCGGCGTGGAAATTATAGGCAACCTGCAGGAGTTTTCGTGA
- Protein Sequence
- MKLSGASEAPHVIEATESSSDKHFKDDIKRRFCNILNKDPPKSSSCSEWSSLPNLEHAAPPLQDSLGIEERSCLNDFSFMKEQEVVLLNEICRACLVKTDNMKHLLEPSEDVVQTITKLASVSNIEVDVNDTLPCYLCSSCEEKLKLSYDFQQLCQKSHQFLLACISANSISFKVNSFKSLPVEEYTGKTETEIEVLTLGNNSDGLINFVDNSALENKIVSYSPQPDLNQEITEGQSNCCVEPVQNVNDVRDIDVETVKEETKDYTIPAQVEKTTKFNQKMRLPQFAPEHVNGIMKKVKEKFFKHVNCLYCGFVANNTRALSLHMTRLHKELKKQWCLWCNKDFADITEHKSRHKDDLKCPLCGKYKQTTGHFMEHLASHSIERSYMCWQCSKGFISMRHLKVHSAVHTSQKQYQCEVCSKKLTSWKSWSSHIKAHRKCEMCGQSFVSDEVYEQHDCFPKEVAKNVETEELPELKLSKKKLPQNYCKLCDRRVRKLENHLKKFHTPIDSNGGIEDVKALCSYCGKLFKSPAKLTVHVRTHTGETPYKCSYCNKRMSTRIHLVVHERTHTGEKPHICKYCGKGFAQTSCLNTHVKLHTGRTEECSICQKRFCRPSELKQHMRTHTGETPYICKICNQGFTQKSHLTGHIRKHTNERPFKCTYCEKHFKQSSSLKSHINIHLGKKPYQCNQCSYSCRQSYCLKQHMLQHNDESKFKWINKCDVCDQYFFNFESYSLHYNSEHGRLEQDGVIKEDMMEVPGVEIIGNLQEFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -