Eads017916.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000089.1:383665-387862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.16 13.2 7.5 1 23 228 250 228 250 0.99 2 17 0.00012 0.0085 17.2 1.7 2 23 260 281 259 281 0.97 3 17 0.025 1.7 10.0 1.8 1 23 290 312 290 312 0.98 4 17 9.6e-05 0.0066 17.6 1.8 1 23 321 343 321 343 0.98 5 17 0.012 0.83 10.9 0.4 2 23 355 376 354 376 0.95 6 17 0.011 0.78 11.0 1.1 2 23 386 408 385 408 0.94 7 17 0.067 4.6 8.6 2.1 1 23 417 439 417 439 0.98 8 17 0.0036 0.24 12.6 1.7 2 23 693 714 693 714 0.97 9 17 0.067 4.6 8.6 1.3 1 23 723 745 723 745 0.97 10 17 0.15 10 7.5 1.3 1 23 754 777 754 777 0.94 11 17 0.00032 0.022 15.9 0.7 1 23 786 808 786 808 0.97 12 17 0.00082 0.056 14.6 4.5 2 23 818 839 817 839 0.96 13 17 0.00023 0.016 16.3 1.2 1 23 848 870 848 870 0.97 14 17 7.4e-05 0.0051 17.9 2.0 1 23 879 901 879 901 0.98 15 17 0.36 24 6.3 8.2 1 23 910 932 910 932 0.96 16 17 0.28 19 6.6 4.1 1 23 941 963 941 963 0.98 17 17 1e-05 0.00072 20.6 1.4 2 23 973 994 972 994 0.97
Sequence Information
- Coding Sequence
- ATGTGCAAGTCTTGCTCGAACAAGGTAAAAGTCCTGTTTGATTTCAAAGCGGCTTGTCTCTACACGGAAGATTTCATAACTCCATTTGTCGATGAGGAAGCGAAGAACAGAATCGAATTGAAGGAATTGTTCCTAAAAGAAAAGGGCTACGATGGGGAACTTGCTTTCATTTTGTGTAATAAGAGTCTTTGCAGACTGTGTATGGGTCTGGCAGATGTAGGATGTCTCTGCTTGGAAGGAAGGGACCCCCATGTAAATTTCGTTAAGGATCGTATTAAAAAATGCATCCCTGAAGTGaATGTTGATAATACTAGAGATGCTGTTGTTTGTGATGCTTGCGTCGAAAGCCTTAAAGACTATTCTGATTTCCTGGACCTGTGTCTacgtttaaagaaaaacaatgaCTTCCAGATTAAAACTGAAGAAATACAAATTGAAACACTTGAGTGCAATCTGTTGGAGGATAgccaaaaagtttttaatgaaTCCGACCAATTTAAATACAGAACTGAATCTACGCAGGACGAACTGCATTCGAATGTATTAAAACTTAATGAATGCGACGACAAAGCAAGTATATTTCCAGTACCAGTGGAGTTGCTCGAAGACGGTTTGAAATACTGCAAGCCGCAACAAATCAACCTCAAAACTCGTAGGAATCAAGATCAGTTACGGAAACGATACAAATGTCACTTGTGCGATTATAAGGCGAAACATCAGTGCGATTTAAAGAGACATATGTTGGTCCATAAGCATTCTTCGGAAATAGAATGGCTCAAGTGTCCTTTATGCGACCATAAAACAAAGCGGAAAGAGAATTTGAAGGGTCATATGCTGGTTCATAAACACCCTGCAGAGACTAAATGGTTCAGTTGCCACTTGTGTACTTACAGGGCTAATAAGAAATACGTTTTGACGGCTCATATGTTGGTGCACAAAGATCCTACCGaaataaaatggttcaaatgcgACTTGTGTAATTACAAGTCGAAGACGAACGGCAATTTGAGGAGGCATACACTCGTCCATAAAGACCTGTCGCAGATGGAAGTAAAATGGTTGAAATGTGACGAGTGCGAATACAGGTCCAGGTATAGATTCAGTTTGGCTAAGCATATCGAGGCGCATAAAGATCCTTCCGAAATCGCATGGTTGAGATGTGATTCGTGTGGTTTTAAGGCAAAAGTGAAAAGTCATTTGAAGTCTCATATTATGTTGGTGCACAGAGATTCCGCAGAGGTGGAGTGGTTCAAGTGTAATTTGTGTAATTTCAAGTCGAAATACGGAAACAGTTTGAGGAACCATTTGTCGGTACATAAAGATCCTACGGAGGACTCTAATAAAAATGGTCTTGTGATGTGCAAGTCTTGCTCGAACAAGGTAAAAGCTCTGTTTGATTTCAAATCGGCTTGTCTCTACACGGAAGATTTCATAACTCCATTTGTCGGTGAGGAAACAAAGAACAGAGTCGGTTTGAAAGAACTGTTCCTAAAGGAAAAGGGCTATGATGGGGAACTTGCTGACATTTTGTGTAATAAAAGTCTTTGCAGACTGTGTACGAGTGTGGCAGATGTAGGATGTCTCGACTTGGAAGGAAGGGACCCCCATGTAAATTTCGTTAAGGATCGTATTAAAAAATGCATCCCTGAAGTGAATGTTGGTAATACTAGAGATGTTATTGTTTGTGATGCTTGCGTCGAAAGTCTTAAAGACTATTCCGATTTCCTGGATCTGTGTCTGTGTATAGAGAAAGACAATGACTTCCAGATTAAAACCGAAGAATCGCAAAATGAAACGCTTGATCCCAGCTTGGAGATCTGCGAAGAGGATTTTAATGGAAACGACCAGTTGAAACACCTTAAGCGCGAATGCCAGCCCACCGGTAATAATCCTGAAGCCAAGCTTGACAACCAGCATCCGAGTGTATTCAAATTTGATGTCTTTGATGAGAAACCAAATATATTACCAGTAATTAACACTTCAGTGGAACAGTTCGAGAACGGTTTGAAACGTTACGGCAAGCTACGACAACGAAACAACTTTAAAACTCGTGCGAATCAGTTAGAGAAGCGGCGCAAGTGTAATTTGTGTGATTACAAGACGAAAGATAAAAACAGCTTGAAAATACATAAGTTGGTTCATAAAGATCCCGCAGACATTAAATGGTTTATATGCGACTTGTGCGATTACAGGTCCAAAAATATACACTACATGAAGGGGCATATGCTGGTCCATAAAGATCCCTCAGAGACGAAATGGTTCAAATGCGACTTGTGTCCTTTCAAATCAAAGTGGAAAGGCAATTTAAACCACCACATTACGTTGGTTCATAAAGATCCCGCAGAAGTTAAATGGTTCGAATGTGTTTCATGtgattataaaacaaaaaccaaaagCAGTTTAAAGGTTCATATGGTGGTTCACAAGAACCCCGCAGAGATGGAATGGCTCAGTTGTCATTTGTGCGATCATAAGACAAATCAGAAATGGAATTTGAAGAAGCACATGTTAATTCATCAAGATCCTTTGGATATAAAATGGTTCGAGTGTCGTTTGTGTGATTATAAGTCAAACCAGAACAACAATTTGAAAAGGCATATGCTCGCTCATACAGACGAGTCACAGataaaatggttcaaatgtcCTTCGTGTGATTTTAAGACAAAACAGAAAAGCACGTTGCAGAGTCATATGTCGGTCCATAAAAATCCCTCGGAAATAGAGTGGTTCAAATGCAATTCGTGTAGTTCAAAGTTCAAGTGTAAATCCCATCTGAAAAGACACATGGTACTCCATAAGGATCCTTCAGAGATAAAGTGGTACGAATGCCATTCGTGCGAGTTTAAATCGAAACACAAAGAAAGTTTGAAGCCTCATATGTTGATCCATACAGATCCCACTAAGATAAAATGGTTGGAATGTGATGTGTGCGGTTATAAGTCGAAAGATAAAAGCAATTATAAGAGACATTTACGTCGCCATAGAGCCTCTGGAAGGTAA
- Protein Sequence
- MCKSCSNKVKVLFDFKAACLYTEDFITPFVDEEAKNRIELKELFLKEKGYDGELAFILCNKSLCRLCMGLADVGCLCLEGRDPHVNFVKDRIKKCIPEVNVDNTRDAVVCDACVESLKDYSDFLDLCLRLKKNNDFQIKTEEIQIETLECNLLEDSQKVFNESDQFKYRTESTQDELHSNVLKLNECDDKASIFPVPVELLEDGLKYCKPQQINLKTRRNQDQLRKRYKCHLCDYKAKHQCDLKRHMLVHKHSSEIEWLKCPLCDHKTKRKENLKGHMLVHKHPAETKWFSCHLCTYRANKKYVLTAHMLVHKDPTEIKWFKCDLCNYKSKTNGNLRRHTLVHKDLSQMEVKWLKCDECEYRSRYRFSLAKHIEAHKDPSEIAWLRCDSCGFKAKVKSHLKSHIMLVHRDSAEVEWFKCNLCNFKSKYGNSLRNHLSVHKDPTEDSNKNGLVMCKSCSNKVKALFDFKSACLYTEDFITPFVGEETKNRVGLKELFLKEKGYDGELADILCNKSLCRLCTSVADVGCLDLEGRDPHVNFVKDRIKKCIPEVNVGNTRDVIVCDACVESLKDYSDFLDLCLCIEKDNDFQIKTEESQNETLDPSLEICEEDFNGNDQLKHLKRECQPTGNNPEAKLDNQHPSVFKFDVFDEKPNILPVINTSVEQFENGLKRYGKLRQRNNFKTRANQLEKRRKCNLCDYKTKDKNSLKIHKLVHKDPADIKWFICDLCDYRSKNIHYMKGHMLVHKDPSETKWFKCDLCPFKSKWKGNLNHHITLVHKDPAEVKWFECVSCDYKTKTKSSLKVHMVVHKNPAEMEWLSCHLCDHKTNQKWNLKKHMLIHQDPLDIKWFECRLCDYKSNQNNNLKRHMLAHTDESQIKWFKCPSCDFKTKQKSTLQSHMSVHKNPSEIEWFKCNSCSSKFKCKSHLKRHMVLHKDPSEIKWYECHSCEFKSKHKESLKPHMLIHTDPTKIKWLECDVCGYKSKDKSNYKRHLRRHRASGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -