Eads024538.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000286.1:113216-116231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00068 0.046 14.9 2.2 1 23 393 415 393 415 0.98 2 10 2.1e-05 0.0014 19.7 0.2 1 23 418 440 418 440 0.98 3 10 0.00086 0.059 14.6 0.4 1 23 446 468 446 468 0.97 4 10 0.00047 0.032 15.4 1.5 2 23 475 497 474 497 0.95 5 10 1.2e-05 0.00081 20.4 0.3 1 23 503 526 503 526 0.97 6 10 8.4e-07 5.7e-05 24.0 1.5 1 23 532 554 532 554 0.98 7 10 0.00014 0.0095 17.1 0.2 2 23 590 611 589 611 0.97 8 10 0.002 0.13 13.4 1.7 1 23 615 637 615 637 0.96 9 10 0.00027 0.018 16.2 1.9 1 22 644 665 644 668 0.89 10 10 0.0016 0.11 13.7 2.3 1 23 674 697 674 697 0.93
Sequence Information
- Coding Sequence
- ATGGGAATTTTCTACTGTTGTGTGAAAGGGTGTTCCAACAACAATTCCCTAGAAACCGTGATTTTATTCCGGTTCCCTAAGGAGAAAGAAAGATGTTTAATTTGGGCTGAGAATTGTGGCCGAAAAGATATAGGGAAACTGTCGCCCGCCTTCGCCTATAATAATTACAGGGTGTGTAACGCGCATTTTAGGAATGACACGTTTTCAAGTCTTTGCAAAAATCGTTTAAAGAGAAATGCTGTGCCGACAATTTTCACGGCGCTTGGTGCTTCGTCAGtcGCTGAATCTGAGTCTTCTGCATGTCGAGATGAGAAGGATACGTTAGCTTCTGAAGAAATCGTACAACCTACAGCAgATGCTGCATATCCCGAATCTGAGGTACAGCCGGTATCACAACCAGCACCAAATGCTATTATACTAGATCCTGCGATGTCAAAACTTGTACTTGCATCTCTGATACAAAATTCTAGCAGCAATATTACTACTAGTAATTTTCCTGTTGCTACTCAGCCGGTCGAGGACCCTTTAACCCTGCCGAACTGTTCGGAAGAAGTCATCAGAATCATTAAAGATGAAGCTTGTGGCTACAACGAACATACAACAGATTCCACTACAAGCGAGGATAAAGTACAGGACAGGAATCAAATGGGGCAAGAGTACAGGTGCAGAACTTGCTTAGATGTCGCAGATAAAGCCTCTTGTATGGTGGTAACGCAGAACTGTCTTTCATCGCTGACAATTAAGGAAGCGATAATTCAACTTGTTCCTCAAATGGCTTCGACATTGAATGATTACCAAGTAGTTTGTAGTGCTTGTTTAGAGATATTGAAGTCGAGTATGAATTTCATCAGGAAGTGTTTGGAAATTGAGGCCATGTTTGAGGATTACAAAAAGAGTACGGAAGaattttgCTTGGAGAAAAACAGGGAAGATGAATGTAAGGTGGAGGTTAAAGATGATGTTGTGGAACTAGTTGGTAGGGAACATGATTATTACATTAAAAGTGAACTAGTGGATGAAACTAGTTTGAGAAGCAACTATAAATCTTTGGATACAGTTGGTCAAGTCGTTGTGGAAGCCTTGTCGTCGTCTCCGggaaagaaattaaaaagccGTAGGCCCAAAAAGTACAAGAAAAGATTAAAGTATAAACCTCCCGAAGATAAATTAATGCAATATACTTGCACAACATGTTCAGAGAAATTCACGTCCAGGGATGAATACAGAGATCATTTCCAGATCCACCCTCCCTACGTTTGCGACATCTGCGGTAAAGCGTACCAAAAAAAAGACTCGATAAAAGCGCATATGGACACCCACAACGACCCCAACTCTTTCATTTGCGAGATGTGCGGGATGGGATTCAAAGCACGGGGTACTTTGGTGCACCACTACAACGTGCATAAAACCGACAGGCCTATCCAGTGCGATAAGTGTTCgaaacaatttaaaaccaaCCGTCGACTCCGAATGCACATACAGCTTGTTCATTTAAAACTTTACAAGTACCAGTGTAATCATTGTGGTGTATTATTCCCGAGTAGCGCTAACCTCAAATCTCATATCAGtgtaGTGCATTTCAAAGAAAAACCGTTTCAATGCGATATTTGTAACAAGAAGTTTGGTAGAAGAGACTATTTACGCAATCACATGGTGACGCATGGCGTTGGCTGCCTCCCCGTTCGAAAAAACAAGAAGCCTCCAACTCGAGTTAGGAGGAAGTtaccaaaaattataataaatgaagATGGTGACGGTAATCCGCTTCCCTGCAAGTTTTGCGGCAAGGTAATCGAGGATAAAGCCAAGTTGAGGAGTCACGTACGTACCCATATCGACAGACACGAATGCCAGTTCTGCAACCAGACGTTTACTGCTAGAAGTTTGCTTGTGAAACACGAATCTATCCACCAGAAAGTGGATACGTATCACAGATGCAATATTTGTTACAAGAAGTTTAAAACTAAACCAGAGCTGGAGCAGCATGCTGCAACGCAGACACACAGACGGCCTCCGCGGTATTCCTGCGATATATGTGGACAGAAGTTCCATAGAAGGTTTACGCTCAGTCAGCATAAACTGGCCGAACATGTCGGAATTGCACAAGTTGCGGAAGCAGAGGAGCTCGTTTACGACAATTTGTTAGAGAAgggtcaaaaagtagaaaccCCAGAAGTAAAAGTTTccgtattaaaaataaacgatGACTCGTTAAATCAAATGTCTTAA
- Protein Sequence
- MGIFYCCVKGCSNNNSLETVILFRFPKEKERCLIWAENCGRKDIGKLSPAFAYNNYRVCNAHFRNDTFSSLCKNRLKRNAVPTIFTALGASSVAESESSACRDEKDTLASEEIVQPTADAAYPESEVQPVSQPAPNAIILDPAMSKLVLASLIQNSSSNITTSNFPVATQPVEDPLTLPNCSEEVIRIIKDEACGYNEHTTDSTTSEDKVQDRNQMGQEYRCRTCLDVADKASCMVVTQNCLSSLTIKEAIIQLVPQMASTLNDYQVVCSACLEILKSSMNFIRKCLEIEAMFEDYKKSTEEFCLEKNREDECKVEVKDDVVELVGREHDYYIKSELVDETSLRSNYKSLDTVGQVVVEALSSSPGKKLKSRRPKKYKKRLKYKPPEDKLMQYTCTTCSEKFTSRDEYRDHFQIHPPYVCDICGKAYQKKDSIKAHMDTHNDPNSFICEMCGMGFKARGTLVHHYNVHKTDRPIQCDKCSKQFKTNRRLRMHIQLVHLKLYKYQCNHCGVLFPSSANLKSHISVVHFKEKPFQCDICNKKFGRRDYLRNHMVTHGVGCLPVRKNKKPPTRVRRKLPKIIINEDGDGNPLPCKFCGKVIEDKAKLRSHVRTHIDRHECQFCNQTFTARSLLVKHESIHQKVDTYHRCNICYKKFKTKPELEQHAATQTHRRPPRYSCDICGQKFHRRFTLSQHKLAEHVGIAQVAEAEELVYDNLLEKGQKVETPEVKVSVLKINDDSLNQMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00722095;
- 90% Identity
- iTF_00722095;
- 80% Identity
- iTF_00722095;