Eads017927.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000089.1:413238-417349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5 1e+02 4.4 3.4 1 23 185 208 185 208 0.94 2 19 0.0011 0.074 14.2 2.3 1 23 217 239 217 239 0.98 3 19 0.032 2.2 9.6 3.5 1 23 248 270 248 270 0.96 4 19 0.0032 0.22 12.8 1.9 1 23 279 301 279 301 0.98 5 19 0.00024 0.016 16.3 3.0 1 23 310 332 310 332 0.98 6 19 0.0096 0.66 11.3 1.3 1 23 341 363 341 363 0.98 7 19 0.14 9.3 7.6 4.4 1 23 614 637 614 637 0.95 8 19 0.034 2.3 9.5 3.4 1 23 646 668 646 668 0.97 9 19 0.0038 0.26 12.6 4.1 1 23 677 699 677 699 0.98 10 19 0.088 6 8.2 0.2 1 23 708 730 708 730 0.97 11 19 0.0008 0.055 14.7 2.1 1 23 737 759 737 759 0.98 12 19 0.0019 0.13 13.5 1.0 1 23 768 790 768 790 0.97 13 19 2.1e-05 0.0014 19.7 1.7 1 23 799 822 799 822 0.97 14 19 0.12 7.9 7.9 0.8 2 23 829 850 828 850 0.97 15 19 0.058 4 8.8 2.4 1 23 859 881 859 881 0.98 16 19 8.8e-06 0.0006 20.8 3.5 1 23 890 912 890 912 0.98 17 19 0.2 14 7.1 0.2 3 23 923 943 921 943 0.93 18 19 0.0004 0.027 15.6 1.3 1 23 952 974 952 974 0.97 19 19 3.3e-06 0.00022 22.2 1.7 1 23 983 1005 983 1005 0.99
Sequence Information
- Coding Sequence
- atggaGAATTATAATGAGTTTATCGATGGTCTTGTAAAGATAGAAGTAAAGGACAATGCAGAAAAACACGAACTAGAGAAAAATGTATATTCCAATTTTCCCATTGAGATGAAGGACGAGTTTTCAAACAACAGCCAGCCTTCGATGGAACATTACGATAGTGTTGAAGTGCAAGGCAACGATTTAATTAGCCGCAGTATTAAGATTAGGGAACAGAAACTCGAATATACGGATGATTTTGATCAAGCGGATGACTATGAATCAATCTCCAAGTACATTAAGGTAGAAATCGATACTGTTAACACCGAAGAGGATGCAGTACCAGTAGAACCCGAGTTGGTTAAAGTTGAGGAACTAGATCTTAATGATTCGGTCAGTGGTACCTGTGAAACTTTGCCGGAAAAGGATATTGTGGATACAGAATCTGATCAAATAGATTGTCATCGGTTGGAAAACATCGAAGAAGATTTAGATGGGGCCCATCGACAGCACAACAAGAAAACTAGACGTGGTACTCGTAAGATTAAAAACGATCGGGCACTCACAGAGTTGTTTCAGTGCAAGTCGTGTGCCTTCAGATCGAACCATGAACGGAGTTTGAAAAGACATGTATCGTTGACTCACCGACACCCGTCACAAATACAGTGGTTCAAATGCTACTCGTGCGATTACAGAAGCAAACAAAAAAGCACCTTAATAACTCATATGTTGCTCCACAAAGACCCATCACAACTAAAATGGTACAAATGCGACAAGTGTAATTACAAGTCCAAACATAAAAATGGTTTGAGCAATCATTCGATCATCCATAAAGATGCCTTGGAAATCCGATGTTTCAAATGCAACTTGTGCGAATTCAAGACGAAAACCAGAGCCCAAGTCAAGTCTCACATGCTGATGCACAAAGATCCTTCGCAGATCGAATGGTTCAAGTGCGTCGTGTGCGACTACAAATCCAAGCGGAAGAGCTGTTTGCGGGTTCACATGTTGGTCCATGCAGATCCATTGGAAGTGAAGTGGTTCAAGTGCGAGCTGTGCGTTTTTAAGACGAAACTGAAAGGTACTTTGAAGAATCACATGATGATCCACAAGAGATCTCGGTGCATGATTGATAAAGTGCAGACTCTTGAATACCCCAACCCTGCACTGGACAATCATACAGTTAAAGCAGAAGAAAATGATAGTCGTAGCGTTCCCAATAAAATGGAAGACAATTCTTTAACCAGTAGCCAAACTCCAGTAAAACATTACGACACTGTTGAAGTGAAGGACAACGATTATATTTGGTCTAATATTCAGATTAAGGAAGAACTTGAATGTACCGGTAATTATACTAATTCACATGACTATGAATCAATCATTGAGAACATCAAGACTGAGAGTGTTGCTGTTAATACCttagaaaataaagtaaaaccTGACATTGTTAAAGTAGAACATTACGACGCTGTTGAAGTGAAGGACAACGATTATATTTGGGCCAATATTCAGATTAAGGAAGAAGAACCTGAATTTAACATCAAGACTGAGAGTGTTGCTGTTAATACAtcggaaaataaaataaaacctgACATTGTTAAAGTAGAAGAGCATGAATACATCAGTGATATCGGTAAAGCTTTGTTGCTGGAAAAAGAATTATTTGGCCTCGAAACTACCACCCTGGAGTTGAAACTTATTGACTGCTCTCAGCTTGAAGACCGTAAAGACGATTTCAACAGGAATCATCTCGAAACGGAATCTCAACAAAGTAATGTGAGTAACTCTACCTGTAAGTCACAACAGAATACTAAACGTGGAACCGGCAGGATTAAAACTTCTCAAGCACTTACAGAGTGGTTTGAGTGTAATTTATGTAGTTTCCAATCGACATATAAAAAGTGTTTGAAGAGACATATAATGGCGTTTCACGTACACCCTTCTGAAATCGAGTGGTTCAAATGCGCTTCGTGtgattttaaatcaaaacagAAAGGGCATTTAACTTCTCATACGTTGCTCCATAAAGACGCATCGGAAATAGAATGGTTCAGGTGTTACAACTGTAATTACAAgtcgaaatataaaaatagtttgaaGGCTCATATGTCGAGGCATAGAAACTCCTTAGAAAAGGGTTTGTTCAGGTGTGACTTGTGTATATACGAGACGGAACAGGAAAGCACTTTACAAGTTCACATGTCGATCCATAAAGATCCCTCGGAAGGGTTCAAGTGCGAATTCTGTGACTATAAGACGAAAGAGAAGGGCAAATTGAAGAGACATTTGTTGGTGCATAAGGATCCCACCGAGATagaatggttcaaatgtgaACAGTGCGACTTCAAGGCGAAGCGGAAAGCCCAGTTGACGACGCATGTGCTGCTGCATAAAGACCCTTCGGAAATAGTGTGGTTCCGGTGCGATACCTGCGATTTCAAGTCGAAGCAGAAAAGTAATTTGAACAGGCATATTATGGTcatgcataaaaatatttttcaaatcaaatgtGATTTGTGTGACTATAAATCGAAAGAGAGGAACAAAATCAAGAGCCACATGTTGGTGCATAAGGATCCGTCGGAGATAGAATGGTTTAAGTGCGATTTGTGTGATTTTAAGGCGAAGCAGAGGGTTCATGTAAGAACGCATACGATGGTACACAAAGATCCTTCAGAGGTGGAATGGTTCAGGTGCGACACCTGCGGTTTTAAATCGAACCGCAAAAGCAACCTCAAAAGGCATATGACGACGCATAGAGATCCTCTGGGAGTAAGGTGGTTTGGATGCGATTTATGCGATTACAAGTCGAAAGAGAAAGAGGAATTGAGAGCCCACGGTCTGGACCATCGGGATCCAGAGGAGGTAGGGTGTTTCAGATGCCGTATTTGTGACTTTCGAACGATGCGTAAAGCTAATTTGAAAACTCACATGCTGGCACATAAAGATCCCTCGGAAGTGGAATGGTTCAGGTGTGGCACTTGCGATTTTGTGTCCAACAGAAAAAGTAACCTGAACAGGCATATGATGACTCATAGCAAGAATCCTTTACAAATTACAAGTAATAAGGGATAg
- Protein Sequence
- MENYNEFIDGLVKIEVKDNAEKHELEKNVYSNFPIEMKDEFSNNSQPSMEHYDSVEVQGNDLISRSIKIREQKLEYTDDFDQADDYESISKYIKVEIDTVNTEEDAVPVEPELVKVEELDLNDSVSGTCETLPEKDIVDTESDQIDCHRLENIEEDLDGAHRQHNKKTRRGTRKIKNDRALTELFQCKSCAFRSNHERSLKRHVSLTHRHPSQIQWFKCYSCDYRSKQKSTLITHMLLHKDPSQLKWYKCDKCNYKSKHKNGLSNHSIIHKDALEIRCFKCNLCEFKTKTRAQVKSHMLMHKDPSQIEWFKCVVCDYKSKRKSCLRVHMLVHADPLEVKWFKCELCVFKTKLKGTLKNHMMIHKRSRCMIDKVQTLEYPNPALDNHTVKAEENDSRSVPNKMEDNSLTSSQTPVKHYDTVEVKDNDYIWSNIQIKEELECTGNYTNSHDYESIIENIKTESVAVNTLENKVKPDIVKVEHYDAVEVKDNDYIWANIQIKEEEPEFNIKTESVAVNTSENKIKPDIVKVEEHEYISDIGKALLLEKELFGLETTTLELKLIDCSQLEDRKDDFNRNHLETESQQSNVSNSTCKSQQNTKRGTGRIKTSQALTEWFECNLCSFQSTYKKCLKRHIMAFHVHPSEIEWFKCASCDFKSKQKGHLTSHTLLHKDASEIEWFRCYNCNYKSKYKNSLKAHMSRHRNSLEKGLFRCDLCIYETEQESTLQVHMSIHKDPSEGFKCEFCDYKTKEKGKLKRHLLVHKDPTEIEWFKCEQCDFKAKRKAQLTTHVLLHKDPSEIVWFRCDTCDFKSKQKSNLNRHIMVMHKNIFQIKCDLCDYKSKERNKIKSHMLVHKDPSEIEWFKCDLCDFKAKQRVHVRTHTMVHKDPSEVEWFRCDTCGFKSNRKSNLKRHMTTHRDPLGVRWFGCDLCDYKSKEKEELRAHGLDHRDPEEVGCFRCRICDFRTMRKANLKTHMLAHKDPSEVEWFRCGTCDFVSNRKSNLNRHMMTHSKNPLQITSNKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -