Eads006567.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000012.1:2316470-2319637[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6 1.8e+02 3.6 3.4 1 23 286 308 286 308 0.94 2 12 0.0016 0.11 13.7 2.7 1 23 379 402 379 402 0.96 3 12 4e-05 0.0027 18.8 4.3 1 23 408 430 408 430 0.97 4 12 0.00036 0.025 15.8 1.1 1 23 442 465 442 465 0.97 5 12 3.8e-06 0.00026 22.0 4.0 1 23 471 493 471 493 0.97 6 12 0.0004 0.027 15.6 0.9 1 23 499 521 499 521 0.96 7 12 1.1e-05 0.00078 20.5 2.6 1 23 527 549 527 549 0.98 8 12 3.6e-06 0.00025 22.0 3.5 1 23 555 577 555 577 0.98 9 12 7.5e-05 0.0052 17.9 7.7 1 23 583 605 583 605 0.98 10 12 0.0017 0.11 13.7 4.2 2 23 612 633 611 633 0.97 11 12 0.00075 0.051 14.8 0.1 1 23 639 661 639 661 0.98 12 12 6.6e-07 4.5e-05 24.4 3.2 1 23 667 689 667 689 0.98
Sequence Information
- Coding Sequence
- ATGGAAGCTTCGAAGCTGTGCGACTCTTTTTATTGCAGGTTATGTGccgaagaaaataaaaacggaACGAATTTATTTTCCACCGACGAAAATTCggataattataatttaagcCAGCTGGTGAACAGGTACTTGCCGCTCAAGATCGAAAACGACGGGAAGTACCCGAGGTTTATATGTCCGGGATGCCACATCCAGCTGGAAGCAACCAAGTCCTTCATGGACCTCATCGTCAACGGCCAGGCGAAGCTCAGGGAACTGTATCGGAACCAACAAGAGGTGCTGCACAGGGAGGAGAAGCAGAGACGAAAACTGGAAGAGGTGCTGCACACCGTCAATCCTAACAGCAGCGTCGAGACCTACACCATACAGTCGGATGAAACAGGAGAGAAATTTCTTATTCAAATATTCTCTGATGGGCCGTTGTTTCCTCCCGAGCACGAGTTGCCGTTACGTGCTGAAGGTTTGGAGAAACCGCGCCGGAAGAGAGGCAGGCCTCCTAAACAAGTTGTCGAAGAAGTGGAAGCGAAAGCAGATACAAACCAGCCGGAGGTAGCTCAGCAAGAGGAAGACAGCGAAACGGATGCAGATGGAAGGAAGCGTCGGAAGATTAAAGCTCCTTCGAGGTACCAGGGTATAGTACAGGGAAAGGAACTGGAAATGGTGTTTAAAGAGGAGGGACTTACAGAGGATGAGGACGAAGGCGATGGTAAGGATGCCGAGGCATCGGTTGGTTCAGAAGAAGTTATCGGGAGGATAGAAATGGAGAACGGGGAGGAATTACAAGCGCCGGTGTATATAAATCGGCCAAAATTTAGAATGAAGTCtgATTACAAGAAAAAGAACAAGAAACGTTACCCGTGTGAGATTTGCAAAAGGGAATTCTTGCATTTCGGTCGATATAAGCTGCATAAAAAGTCTCACAAAATGAAATACGTTTGTCAGGAAGAGAAATGCGGCACTGAAAGCTTAGATAAAGCAGTGGTGGAACAACACCAGTCGGAAACTGGGCATACCGGTATAAACGTTGTCGAAATAGTCGAGTCTGCTGGAGGCACTGTACAGTTACCCGAAGGCGTTGCAGATTTGATTAACGAAACGGAAACTGGTTCGTCGACGCCTAGCGCCTCCTCGTACAAATGCCAGGACTGCAATAAAACTTTCATCTGCAAACAAAACTTGGACGTGCACCGCCGAGCCGTTCACAACCAAGAGAAACCGTTTTGCTGCGACAAGTGCGACAAGAAGTTCTCGTACGCAAACAGCTTGAAGCTGCACATGTTGAGACACGAAAAGGACGCAACGGATAATCCAGCGAAAGAATACCCCTGTGAACAGTGCGGGAAAGTGCTACACCACCCGAGCAGCCTGATCTACCATCGCGAAACGGAGCACAGCAACGGCAGGCGGTTCATCTGCAACAAGTGCAACAAGAGTTTCAAGCACAGCCAGttACTGCAACGTCACCAGCTGGTCCACTCCGACGAACGCCCGTTCCGCTGCTCGGAATGCCTGGCTTCCTTTAAGACGCACGCCAATCTAACTAACCACGAGGCGGTGCATACCGGTGAGAAGAAGTTCGTTTGCAACAAGTGCGGGCAGAGATTCGCGCATAGGACTTCGCTGACGTTGCACCAGCGCTGGCACGAGGGTTACAAGCCGCACACCTGCGACGTGTGCCACAAATCCTTTTCGCAGAAAGGCAACTTGGCGGAACACAAGCGGATCCACACCGGCGAGAAGCCGTACTGCTGCGATCACTGCGGCCGGTCCTTCACCACGTCGTCGCAGTTTAGTTTGCACAGGAAGAGGCATACAGGTGAGAAGCCGTGGACGTGCAGTTTCTGCGGCAAGTCCTTTTTGCATAAAGATACTTTCAAGACGCACGTGCGGCGCCATCTCAACGACCGTCCGTTCAGTTGTAAGGCTTGCGGGGGAGCCTTCACCGAGGCTTGGGCGCTGAAGAGGCACGAACGTACCCATTCGGGCGTAAAACCCTACTCCTGCGACATTTGCCATAAGACCTTTGCCGACAATTCCAATAAAAGGAAGCATATGCGCATCCACGGGTGCGGTCGCAACCAGAGCGACGACAACACtAAATTCCCGAACATGGCGCCTGCAAACGTCAAGTATATTCTAAGCGACAGCCTCCTAAACCCCATTTACGAGGAACAGTTCGAGATTAAGGATTCGCCGCCATTGTTGAATATCCTGGATACTACAGAGAGTAAGCGAGAAGTCGCTGATCTACACTTGACGCAACTGGTGGACCAAGAGGGGAATCCTATCAGCGTCACCACGCCAGACGGGCAGATGGTGCCGGTGGTGACGGGAGCGGACGACGAGGCGAACCTCCAGGGGCTCCTGCCGGACGGGACGCTGATACCGATCGAGTTAACGTCTTTACAAAGCAAGGAGGTCGTCGAGGATGTTCCGCAACAGGAAGACGGTGCGGCGCTGCTCGAACCGGAGGCGCAGGATGGGTTAACCGTGTTGAAGCAGCATATCATAACTGGTGACGACGGCCAGGAGGTTTGCTTGGTCACCTACAACGTGGACGATAATTGCGGCGTGAATCCCGAAATTGGGATCGACTCGTTCCTCATTGAAAAcatgaaaaactaa
- Protein Sequence
- MEASKLCDSFYCRLCAEENKNGTNLFSTDENSDNYNLSQLVNRYLPLKIENDGKYPRFICPGCHIQLEATKSFMDLIVNGQAKLRELYRNQQEVLHREEKQRRKLEEVLHTVNPNSSVETYTIQSDETGEKFLIQIFSDGPLFPPEHELPLRAEGLEKPRRKRGRPPKQVVEEVEAKADTNQPEVAQQEEDSETDADGRKRRKIKAPSRYQGIVQGKELEMVFKEEGLTEDEDEGDGKDAEASVGSEEVIGRIEMENGEELQAPVYINRPKFRMKSDYKKKNKKRYPCEICKREFLHFGRYKLHKKSHKMKYVCQEEKCGTESLDKAVVEQHQSETGHTGINVVEIVESAGGTVQLPEGVADLINETETGSSTPSASSYKCQDCNKTFICKQNLDVHRRAVHNQEKPFCCDKCDKKFSYANSLKLHMLRHEKDATDNPAKEYPCEQCGKVLHHPSSLIYHRETEHSNGRRFICNKCNKSFKHSQLLQRHQLVHSDERPFRCSECLASFKTHANLTNHEAVHTGEKKFVCNKCGQRFAHRTSLTLHQRWHEGYKPHTCDVCHKSFSQKGNLAEHKRIHTGEKPYCCDHCGRSFTTSSQFSLHRKRHTGEKPWTCSFCGKSFLHKDTFKTHVRRHLNDRPFSCKACGGAFTEAWALKRHERTHSGVKPYSCDICHKTFADNSNKRKHMRIHGCGRNQSDDNTKFPNMAPANVKYILSDSLLNPIYEEQFEIKDSPPLLNILDTTESKREVADLHLTQLVDQEGNPISVTTPDGQMVPVVTGADDEANLQGLLPDGTLIPIELTSLQSKEVVEDVPQQEDGAALLEPEAQDGLTVLKQHIITGDDGQEVCLVTYNVDDNCGVNPEIGIDSFLIENMKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -